Array 1 161755-160950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMR010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1702 NODE_3_length_278414_cov_58.4797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 161754 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 161693 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 161632 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161571 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161510 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161448 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161345 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161284 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161223 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161162 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161101 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161040 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160979 29 96.6 0 A............................ | A [160952] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180357-177887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMR010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1702 NODE_3_length_278414_cov_58.4797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180356 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 180295 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180234 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180173 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180112 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 180051 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 179990 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 179929 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 179868 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 179807 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 179746 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179685 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179624 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179563 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179502 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179441 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179380 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179319 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179258 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179197 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179136 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179075 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179014 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178953 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178892 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178830 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178769 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178708 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178647 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178586 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178525 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178464 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178402 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178341 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178280 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178219 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178158 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178097 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178036 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 177975 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 177914 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //