Array 1 512889-511513 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000013.1 Erwinia sp. CPCC 100877 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 512888 32 100.0 34 ................................ ACCAAATCCGAATGGATCATACGATCCGGATTCA 512822 32 100.0 36 ................................ TCAAGACATACCAATAGACGCGCCCGTCAGTTGGGC 512754 32 100.0 38 ................................ TTTTCAAACCTATCCGCCATCTTCTTACCAAATTGAGT 512684 32 100.0 34 ................................ TTCTGGTACATTTGATCTTGGCCGTATGAATTTG 512618 32 100.0 36 ................................ AAAGTTTCTAAGGAAATTCTGCCATTGCAGATACGC 512550 32 100.0 34 ................................ AGCTGTTGCTGTGTGATCACTTTCTTTGAGTTAA 512484 32 100.0 35 ................................ AGGAAGACACCGCCGAAAGAGTGGATGCTATTGAA 512417 32 100.0 34 ................................ ATCTTCGCGTTGTTTGATGTATTCATCAGTTTTG 512351 32 100.0 36 ................................ GGGAACATCGTCTATGAGAGCGATTGGGTATTTATT 512283 32 100.0 35 ................................ AGCGATTTGTTAAACCATAAACAGGTGCGGCGATT 512216 32 100.0 35 ................................ AGGAGCTAAGTCATTGACTAGGACATCGTAAATTG 512149 32 100.0 36 ................................ TATACAATTATTTAGTTATGACACAATGGTCAAGAG 512081 32 100.0 34 ................................ ATATTAAAATAGACAAATTAGACATCCTTTCATT 512015 32 100.0 35 ................................ TGTTAAGCTGGCAATTTCAAACGTAAATACGGAAT 511948 32 100.0 36 ................................ GGAATGGAAAAAAGTATGAAAAGATTACAGGAGGAT 511880 32 100.0 34 ................................ ATCAAATCATAGTCATCAATCAATGCTTTAATTG 511814 32 100.0 36 ................................ ATATTCTTGGTATTCGTCATCATCGACTTGTCTATA 511746 32 100.0 37 ................................ AATTGTTTCCCCCTCTCGCGCTTTGACGCCCGCAACA 511677 32 100.0 36 ................................ ACAGACAAAAAGACAGGTGAGCTGATCAAGGTTCCT 511609 32 100.0 33 ................................ AAATTTGAAGTTCTTTGTTGCATCGTTTCCTTT 511544 31 87.5 0 ..................A...T-......C. | C [511518] ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.4 35 GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Left flank : AATTGCCGGGGAATTAGGCGGAGATACGCCGAAGATTGCCGGTATTCAGATTTGTCGAACATTATACACAATTATTGTTTTACCGAATTTGGTTCGATGGTTTATTCAAAGATAAGAATAAAAATACGCTTCTATTTTTGACGTGTAAGGGATGTCTTTATCAGTTGACATGTTATTAAATACTATTGTGTAGATTATTAAGTACAATTAAAATAAAGACTTGGAAACAATTATCAAACAATCATTTCTACTTAAAATCAGACCTGACTTCTTGTAGAAAAGCTATTATCGTATGTGGTAAACTAAAAAAGAAAACCTATGCAAATAATTTTTGTTTATTGGTGCGAACCCCAAGTGCACATAAAAACTCAGGAAGATCCGCACCAAAAAATTACTGTATCATCGCATCAAAAGCTTTACTTTCTCATGGAAATTTAATTTCAAAAGGATGAAACGGATTAAATTTAGCGAATAAAACATATAAATTAGCTGGATTCGCG # Right flank : ATTGCTATCCAGCATTTGTTTCTAATTTTTTCTTTATTCTTCTAATTTGAGATAAAGAGCAGCTGTAGTCTTTTAGCTTTAGACTACGGCTGCTCTTTATGTTTTAACTTGGATCAAACAATGCGTTATTGATACTTAATGTGTTGATGTTGCATTCTTAAATTTTCATTTTATACTGCTTGCAGAATTTCTAGTGATTACTGGATAAAACATTTGAATCGGTATCTTGGAGGCCCTACTGTCTTTAGTCAAGCTAAAAGTCGAAATTGTTCCAATTGCTCTTATTTTATCATCAATTAGCGGCATTCAGCTCTTTAATTGAAACATTATGATCCAAAATTCCGCCTTCATTTTTTAAAATCAACGTTCCTGCGCTTGGATTAACAGCTAAAACAAGCTTCCCAGTTAAAAAGAGCGCATCATAATCTGACGTATAAACGCGATAGGTTTCATTTTGGATAAGCTTGGTGAAGGGTTCAATTGGTTCGTTAGTGGGAACA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 241208-242891 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000024.1 Erwinia sp. CPCC 100877 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 241208 28 100.0 32 ............................ AACGTTACCCCGCCCCTATGTCACAGGTCCTG 241268 28 100.0 32 ............................ ATTGCCAGTTTGATGTGGTGGGAGGCGAGGGT 241328 28 100.0 32 ............................ TGCGGCGCGGTCGAACCGCTCTGACGCTTGAT 241388 28 100.0 32 ............................ AACGGATCATCTTTGTTCGCGTCCGGCCCTTT 241448 28 100.0 32 ............................ ACGGGCGGAGCCGCTTTTTAACTTTTATCTTT 241508 28 100.0 32 ............................ ACTGGCATCGATTCGCTCAACGTTCGAGCAGA 241568 28 100.0 32 ............................ GATTTCACGAGGCAGATAATGTCTGACGATAA 241628 28 100.0 32 ............................ GCCAACATTCCGATCACTATCGCGATAATGAT 241688 28 100.0 32 ............................ GCGCGGAGATCATTACCCGCGCTTACGAATCG 241748 28 100.0 32 ............................ AGCCAATTCCGGCTGAGAGAAAACGAAATAGT 241808 28 100.0 32 ............................ TGCGCGTCCACTTTTTCTTTCGTGTTTTCATC 241868 28 100.0 32 ............................ ACGCAGATTACATGGAGTCGTGGAGATGTGAC 241928 28 100.0 32 ............................ TTCAAAATCATCTTTAGCTGACGCGCTGTTAG 241988 28 100.0 32 ............................ ACTATCGCGATAATGATAATTTTCATTCTTCC 242048 28 100.0 32 ............................ AGAACGCATCAGAAATGTTAGCGATGCTTTTC 242108 28 100.0 32 ............................ CTCCTCGCTCATAGCTTCTAATTCGAGATACA 242168 28 100.0 32 ............................ TCGAAGACACGACGTTTATCGACTGCAAAGGG 242228 28 100.0 33 ............................ GACTGGCGAGCTCGCTGTCGTTTGAAAAGGTAT 242289 28 100.0 32 ............................ GCAGTTCGTCATAGATCATGCCGGGGGCTATA 242349 28 100.0 32 ............................ TCCGGAGGGAACGACACCATCTGATCCGGTAA 242409 28 100.0 32 ............................ GGGCAATTCCGCCCGAGAGAAAACGAAATAGT 242469 28 100.0 32 ............................ GTCGCGGACTATCTCGCTCGACGGGGTTACAC 242529 28 100.0 32 ............................ CAATCCAAAAGCGCCGGCGATGGCAGAAATCA 242589 28 78.6 21 .....................GCGCCT. TTGGTGCGCCACTTTTACCTG Deletion [242638] 242638 28 100.0 32 ............................ TGACGGCAGCGTGCGGCGTGAACTGAGGCCAC 242698 27 82.1 33 ...T...A........A..-T....... AAATATTTATCTTTCCTGATTTCCAGAAAAATG T,A [242704,242715] 242760 28 82.1 13 ........T.A.......C..C.G.... TACCAGCGCGGTG GG [242778] Deletion [242803] 242803 28 96.4 32 C........................... TGCCAGACTTTTCCGGCTTCTTCGTATTCACG 242863 28 89.3 0 .....................C.GC... | C [242883] ========== ====== ====== ====== ============================ ================================= ================== 29 28 97.5 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCGCGGCCAACAGGGAACAGACCTCTTTGCTGCGCGAACACTCCACCGTTGTACGGCGATCTTCGGCGAGATGATCAATAAAGATGCTGATATCGGAAGGGGGAATCAACGCCTGAAGATCGGGCACGATCATATGCGCAGCGCGTTCGGAAAGCGTAAGTTTAAGAGAGGCTGTTAACATGAAATTCCGCTGAAGTAACCACTGGCGCTACCCTACCTGATAACGGTGCTTTTTTGAAGCTTTTGGGCAATATCAAGAATGGATGTCCTCCGGGTATTGCCAGTATATGATTATCGCGCCCTAAATAAACATGGAGATTATGGTGGGGCTGTTAAGTCCGATAGCGAATTTTTTGTTCTGCCAGAAAAACCCTTTTTCTGGCGGCGTTTCTAACTTATTGATTTTACGTACCCAATAAACCGCCCCAGAAAAAAGGGTCTACCTTATAAATCGCGAATTTCTCTTTTCGTAACAGATCGATAGTGCTATTTTACTTCT # Right flank : ACGTATCCCCATTTTTCGAAACCTCTGTCCCAGAGGTTTTATCTTATTGATTATTATCAATGGTTAGTGTGGCTTATGTGTTTACTCTTAATCCCGACATGCCGTTTATTCCCTGCCATTAGCGATAACCAGGTACAGGAGCAAGCACAACCATGAGCGCCAGCGATATTCGTCCATCCGATTTAAAAACCATTCTGCACTCCAGACGCGCCAACATTTATTACTTACAGCACTGTCGGGTGCTGGTGAATGGCGGGCGTGTGGAGTATGTCACGGAGCAGGGCAAAGAGTCGCTGTACTGGAATATCCCTATTGCGAATACTTCGGTGGTGATGCTGGGAACGGGTACCTCTGTAACCCAGGCGGCAATGCGCGAATTTGCCAGGGCTGGCGTGATGGTGGGATTCTGCGGCGGCAGCGGCACGCCGTTATATGCCGGAAACGAGGGCGATATTGAGGTGTCCTGGCTGTCGCCGCAGAGCGAATACCGGCCAACGGTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 247442-248490 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000024.1 Erwinia sp. CPCC 100877 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247442 28 100.0 32 ............................ AGTTCAGCCAAGCTTTTCTGCCTGTCCTGTAT 247502 28 100.0 32 ............................ GTCATCAGTTTCTATTGTGAATGTAACATCAG 247562 28 100.0 32 ............................ CTCGATTTCAGATTTGAAAAAGGGCAACACCT 247622 28 100.0 32 ............................ ATTACCTTTCCCATTTAAACCCGTTAAAACCG 247682 28 100.0 32 ............................ AGGCAATAGTGCTTGAGAGAAAACGAAATAGT 247742 28 100.0 32 ............................ GCATACATAACAATCAACCACTTACGATATTA 247802 28 100.0 32 ............................ GTGGAAGCGATGGAACATCACGACGATTCCCC 247862 28 100.0 32 ............................ AGTCACCTCCGGGCGGACTGACCATTCCGCCC 247922 28 100.0 32 ............................ GAAACGCGGCAAAGATTCCTATGTTACGCGCA 247982 28 100.0 32 ............................ TGAAACCGCGGGTCCCGGATGTACTGCTCGTA 248042 28 100.0 32 ............................ ATAATTACATTCCTCTACAAATAAAAATACCA 248102 28 100.0 32 ............................ TGTTATGGGATGCACAACGCCGCGCGGGTATC 248162 28 100.0 32 ............................ AACATTATAATTCTTATATCTCTCATTCGTCC 248222 28 100.0 32 ............................ AGCAGACATTCCAGCGCGCCGGAGTCATAAAC 248282 28 100.0 33 ............................ ATCCTAACGTCTGAAATAGTTACAGGATAATAG 248343 28 100.0 32 ............................ ACACGCTCTGAGAAAAATTTCTGCCGTGAGTT 248403 28 100.0 33 ............................ CGTAAATCTCCTGATTAATATCCGGCTCCAGCA 248464 27 92.9 0 .....................C.-.... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTACAGCGCCGAACGCCATTCAGAAAGTCACAGCCGGAACAGCCGTTCTTTCTTTATACCGACGATGAAGATGAAGCGCCTGATTTCTTTTTCCTTCAGCAGAATGGCGAACCGAAGCGGGCGGATGGCCTGAAACCTGTTGAGTTAACTCAGGCGCAGGGCGTACAGCTCTGGTTCGATATCGATTACCAGCGGATACTGATGGCGCTGGCGGAACAGCGTCAGATGGAAATCAAGAACGTATGTCTGCGCTATGGCGAAATTCTGTTGCGAAGCTCGAAAGAGCAGGCCGAGAGCGACTGGCTATATCATCCGGGGTTAGGGGTGTTCAGGAATTATAACTAACGATGTTTAGGACACGCATTGGCAACCCTTTTTTTTAACGTGTATGTAACCCATTGATTTTATTTATACGGATGTTCGGGGCAGAGAAAAGGGTATCTGGTTCAGAATTGGTGGTTTTAGTTTATAAAATGGCAGGTTACTGTTATCTTGCTTCT # Right flank : AAGAAGATCGACACGACAGAAAATCATAATTAAAACCCACCCTGTTTTTCCGGTACTACCATCTACGGAAAGATTCATCCCGCGTCTGAATTTGATAGCTGCGATGCTTCCTTTAATGTTGCCATTGAGGCACATATAAGCCTGAACAGGCATTTCTCTTTCAGGACAGATGCATCAGGATCTTTTAACATACAAACAGCCGGAATGAAGGGGGCGGGCGCTTTTTCTCCATTCCGGTGACGGAATAATTTAGATAATTTGATAATTATCAATAGATAACCTGGGCTATGTCGTTAACCTTTCTGGGTGATATCCGTTATTTTTTCTCTACATCATGAATGCAAAATAGTTAAGGAGTGCTCATCTTAAGGAGGAGTGATGCCACACACACCACTAACCGATTTTATCGCCGGATTTATCGCCACCCGAAGGCAGACAAAGCTGGAAGCGTTTGATAAAGCGGCGGCAAAGCGGGTGGAGGCAGATGGCGAGGCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173223-175770 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000041.1 Erwinia sp. CPCC 100877 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 173223 33 100.0 35 ................................. TCCAACTAATAGTAAATTCTGTCATAATAGATCAA 173291 33 100.0 33 ................................. CTAGTTGCGAAGCTTTTATTTTAATAATCCCAT 173357 33 100.0 34 ................................. TAAAATACTCATGTAATCGGGAGACCAAACCCCG 173424 33 100.0 35 ................................. TAAAGCTGTTACACGTGCGACTAAAGCGTCGTAAT 173492 33 100.0 35 ................................. TGTAATGTGCTTGTTTCAACTTATAAAGCGGCTTT 173560 33 100.0 35 ................................. CCTTTGCTCCGTTTGCATTGTTGGGTAATGATTAC 173628 33 100.0 35 ................................. AAGCGGTAAAGACAACGAAACAATGCAAGAAATTG 173696 33 100.0 36 ................................. GACCAACCCCGCGACTTTTTTTGTACAGGACAGTTT 173765 33 100.0 33 ................................. AAAACGACGACGGAAGCATAACGGCAACGGTCG 173831 33 100.0 35 ................................. GCAAGTAAAGTTATATCTACTTCTATCGCTTTAAA 173899 33 100.0 34 ................................. ATTCCCGAAACTGAACGAATCAACAATCGTTAAT 173966 33 100.0 36 ................................. TTAACTTGTCCTTGAATTGCGTAAAGAATGCGGGAT 174035 33 100.0 36 ................................. GACCCAATGTGGCAGACAGTATTCAGTTTTGATAAC 174104 33 100.0 37 ................................. CCAAAAATCAACGAAACACGTAACGCAACTACAGCGC 174174 33 100.0 35 ................................. TGGTTGTGGGTCTGGTGGTGGTGAAGTTGGTTTTC 174242 33 100.0 34 ................................. AATTAGGAATGGGAGATAAAACTAGAAAAAAATC 174309 33 100.0 34 ................................. GCTATTAGGCGAAGCGATTACGCTACCACTGGTT 174376 33 100.0 36 ................................. AACCTTAGCACATGAAAATATTTCAACGATTGGAAT 174445 33 100.0 34 ................................. CCAAAAATCAACGAAACACGTAACGCAACTACAG 174512 33 100.0 34 ................................. TATGCTGGTAATTGTCGCTTATCCTTATCTTGTA 174579 33 100.0 36 ................................. GATTAGTCTGGCTCTTGTTGTTTTGGTGTTTACGTC 174648 33 100.0 35 ................................. AGCACTGGCACGGCCACCCAAGTAGTCCCCTTTGC 174716 33 100.0 36 ................................. AGTTAAAACACCATCAATCATGATTTCGGGTGGTGG 174785 33 100.0 35 ................................. ATAATTCGGCTGATCGTTGATGATATTGCATTAAA 174853 33 100.0 35 ................................. TAGAAGAAATGGATCTATTATCAAAAGAGTATGAC 174921 33 100.0 34 ................................. ATGAAAATAATTTTTGATGTCTAGTAGGACTGAA 174988 33 100.0 36 ................................. ATTATTAATAAGCTTAAAGATCTGACGTTGAAAGAC 175057 33 100.0 36 ................................. ATGAAAACAGTCGTTATCAGGATATGGTAGACAAAC 175126 33 100.0 33 ................................. AGTACAAATATGGTTTGGTTTTACCCCGGTCTA 175192 33 100.0 34 ................................. ACGCTCTTTAAATTGGATTTTGTCTGCACTATTC 175259 33 100.0 34 ................................. ATTAAAACAATGGCACAGTTTATCATTTCAGATA 175326 33 100.0 35 ................................. CGCTTATGGCTATATTATTGTTCGCTGCATTCTTT 175394 33 100.0 35 ................................. ATATAAAAACACAGACTTGATTATATTATGTTTGC 175462 33 100.0 35 ................................. CTCTTAGGTATTTAATGGATGAGGTTTTCCCTACC 175530 33 100.0 36 ................................. AAATGTAGCATTTGGTAAAAAAGCATCATCATTACT 175599 33 100.0 34 ................................. CATATGGGCGGGATTAAAAACGGAGGTTTTGCTG 175666 33 100.0 34 ................................. TTTTATTGGTGGCGTTAGGTGTATTTTTTGGGGC 175733 33 90.9 0 .......................TT......T. | TTT,CG [175755,175763] ========== ====== ====== ====== ================================= ===================================== ================== 38 33 99.8 35 GTCTCATCCTTTATTGGATGAGTGGATTGAAAT # Left flank : GCTGGATTAGAACAGGAACTTTTGAGCAAAAACAATCCGGTTGTGCAGTCATAATGTCCAATGCTTCAGAAGGAACAAAAAAAATGACCGTCAGTGCTTTTCATGCTGGCCAAACTTTTGTTGATGTATTAGGTAATAATGATGCTAAAGTTACTTTGGATGAAACAGGAACAGGTAGTTTTCCAGTTAATGAAAAAGAAGTTTCTGTGTATGTTAATGCGTCTTATGCAGACCAGTTGAAAAAGGAAATAAACGATAATAGCTGATCTTTTGGGACTTTACTTCTGCGAATAGAATTATTATACTAGTAATAAATTGTTTACTTAATTTGAATGTTTAGAGGTGCGAACCCCAAGTGTACATAAAATCACTGGGGGATTCGCACCAAAATTTCCGCGAATAATTGAGAAATTTCGTTATTTTTCTCATTGAATTATCATTTTTGGGAAGCTTTTTAAGTGGAAATGGCTGGATTTAGTTTAAAACCACCTATTTTCACA # Right flank : TTTTCCCAATTCTTATAAACTATTCCCCGTACATCAGTTCAGCTTTTCTTATTTTTTTGGTATAATGGATAAGATTGAAATAAGAGAGAGGACGTTGAGGATGGCACAAGTAAACGCCTTAATTCAAGGTATGAATCCGAAGCAAAAAGAAGCTGTTCTTCACACTGAAGGACCGTTGTTGGTAATGGCAGGCGCCGGCAGTGGCAAGACTCGGGTTTTAACCCACCGAATTGCTTACTTAATAGAAGAAAAAGATGTGAATCCCTGGAATATTCTGGCAATTACATTTACAAATAAAGCGGCAAAAGAAATGAAGGAACGGGTTGGCAAGCTGTTAAAAGCCGGCGGCAATGATGTTTGGGTTTCTACTTTTCACTCGATGTGCGTGCGGATTTTGCGCCGAGATGTCGATCAGATTGGTTATAACCGGAATTTTACAATCATTGATACATCGGAACAACGGACATTAATGAAACGAATTTTAAATGAACTGAATATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCATCCTTTATTGGATGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 328002-330585 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000041.1 Erwinia sp. CPCC 100877 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 328002 33 76.5 34 ................A.C.C..A..C..-..TC TATGAACAGAGAAGATGTCTCACTCTGTTTAGGA A,G [328022,328025] 328071 33 97.1 35 ...............-.................. GCTTTGTTTGTACTCGTAAATAAACGATACGCTCA 328139 34 100.0 35 .................................. ATTTTTTCGTTGAGTAACAACCTACCAGCTCCTTT 328208 34 100.0 36 .................................. TCGTTATATACGGCACCGTTAGACATTTGCAAGAGC 328278 34 100.0 35 .................................. CATCTGATGCACGCCAGCCGAACAAATCCGGCCAT 328347 34 100.0 37 .................................. CATATTTATAAATCACGATCGCGCTAGGGAACGGCGC 328418 34 100.0 34 .................................. ACATTTTTGGCTGGGGGGATATTTCTTTGAATAT 328486 34 100.0 34 .................................. ATTTGAACAGAATAAGATTGATGCAATATTATTT 328554 34 100.0 36 .................................. TAATTCTGCACCCACTAAGCCGGCACCATATTCCCA 328624 34 100.0 36 .................................. GGAATAAAGCAGACTATTACGGTACACCAACAGAGG 328694 34 100.0 33 .................................. ATATTTTTTAAAAGGAGTAAAAAGCTTTTTAAG 328761 34 100.0 37 .................................. AAGGTTAGGATGATTTGGCGCTGGTGGGTTTTGCTCC 328832 34 100.0 37 .................................. ATCAAATTTGGTTATCACGTTGGCTACGCCTTTTGTG 328903 34 100.0 34 .................................. TGGCTCATATAGCTACGAAGGGTCATATGATCCT 328971 34 100.0 35 .................................. TAGCGTATCTGATGATACGGACGAAGAAACAGATG 329040 34 100.0 35 .................................. GCATAGGGTTGCTTTGCATGAGTTCCATTGCCTCT 329109 34 100.0 35 .................................. ATCTTCGCGTTGTTTGATGTATTCATCAGTTTTGT 329178 34 100.0 33 .................................. TCTGCCAATGTCAAGCCACGAGCTGTCATCCCG 329245 34 100.0 35 .................................. TTGCAAGTATCGTAAGTGTGCAGTGTGCGGTAGAC 329314 34 100.0 35 .................................. TTAAAGACGGTTTAGACGGTGCACCTACATTTTAT 329383 34 100.0 35 .................................. TGTTGATATTACAGGAACGAAGCCTGGAACAAACG 329452 34 100.0 35 .................................. AGATTCTTTTTTATTTAATGGGTGTTGGCCTGCAA 329521 34 100.0 35 .................................. AGTTTTGATCTGGACAGCAACATAAAAAAACCAAT 329590 34 100.0 35 .................................. AGTCCTAAATCGGCAATATATCCGGTTGTTACAAC 329659 34 100.0 35 .................................. TTTATAAGTTGGATATGATCTAAACGCTGCTTGTA 329728 34 100.0 34 .................................. GCCGTTTTGGTTTGTGTAATCCCTGTTAACTGCT 329796 34 100.0 35 .................................. CAAAACATCGCACAATTCCACCACCCTAACACGCT 329865 34 100.0 35 .................................. ACTCGATCAGTTGATACTGGATTTGAAGGAATGTT 329934 34 100.0 34 .................................. ACAATTATCAAATTGTTTGGCCGTTGGATTCGGT 330002 34 100.0 33 .................................. CCTACAGCAAGCCCACTTGGTGTGTAACGTAAA 330069 34 100.0 36 .................................. GCCGAATGGACGTATCAATGATTTAGGAACCAGATA 330139 34 100.0 37 .................................. AGAATGCTGTTTTAGGTGTAATGGCATTGCGCTGAAG 330210 34 100.0 36 .................................. AATGAAAAACATCTTTCCATCAGATGCCCGCCAGCC 330280 34 100.0 35 .................................. TAGCTTTGGTGATGAAAAATTAGATAAGTCACAAG 330349 34 100.0 33 .................................. AGACTGGCAAGGGACAGAGGAATTTAAAAACAA 330416 34 100.0 35 .................................. TGCGGATGAAATATGTGGAAGGCCTGACACTTAAA 330485 34 100.0 33 .................................. GTTTAGGCTGTTAGGTCGTTTGCTGTGGTTATG 330552 34 82.4 0 ........................CTT..TT.T. | ========== ====== ====== ====== ================================== ===================================== ================== 38 34 98.8 35 GTCTCACTCTGTTTAGGAGTGAGTGGATTGAAAT # Left flank : GCAGACATTTTGCCATTATTCCGGTTAAATAAACGTCAAGGAAAAGCTTTACTGAAGGAACTTAATGCGCCGGCTGAATTATACCTAAAAGTACCGACTGCCGATCTAGAAGATAATAAACCTTTAGTTGCAGATGAGGTTGCTTTAGGTGTCACTTATGACGATATCGACGATTATTTAGAAGGCAAAACAATTTCTCCAAAAGCCCAGGAAACGATTGAAGGCTGGTATCTGAAAACACAGCACAAACGCCATCTGCCAATTTCGATTTTTGATGATTTTTGGAAATAGCCGACTAAAAAAATTAAGTGCAGGTGCGAACCCTAAGTGCACATAAAAACACTGAGGGATTCGCACCAAAATAGAGGGAAAAAGTGTTTGTTTTTTGTTGTTATTCTAATCTCATTTTAATCTTTTGCCCGTTTTGAGTGTCAAAAGAAAGATTTAGGAGAATTTTTAGCGAAAATAACGCTTTTTTCACAGTCTCACTCTGTTTAGGA # Right flank : TTCTAAAAATTTCTGTTACCGACATCTACCAGCAATATCATCATTTTTCTACTAACTTTATTTTTTTATTTTTACTGCTTCATTTTGTTCAAATAATTAAAAAAAGTGTAAACTTAAATTAATAAATAAAATGAATCGCAAACGTATTTTACAATAAAAGTAAACCAATGTTAGGAAGTGCTGCTACGATGAAAAAATGGTTTAGAAAAAAACGAGATATTGATGCAGAACAAATCGTTTCAGCAAATAATACTATACCAACCGTTTCAATTGATACTATTAAAATTCCTGAAGCAATCAAAGGCTTATCCGATGCAAAAGCGCAACAGCTTTACAGTGAAGGAAAGTTCAATAAAGAAGTGGAGGAGCTTTCGCGCACAACGAAACAAATTATTCTGGATAATTCGCTAACGTTATTCAATTTCATCAACTTATTTTTAGCGATTGCTGTTTTTTTAGTAGGTTATCCTAAAAACGCACTGTTTTTCTGGATCATTATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 335495-336689 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000043.1 Erwinia sp. CPCC 100877 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================================== ================== 335495 33 63.6 52 ...................CTCACTC.GTTT.G AAAAAAACGACGTTAGCAAGTGAAATGAATTTTACGTCTCACTCTGTTTAGA 335580 32 75.8 19 .................A-A.AC.C....GT.. TGTAGGCGAATACACAATC Deletion [335631] 335631 33 75.8 54 ...................C.C.CTG..T.G.G GTCCAGACTATCTCCATGTTTAGCTTGTTGATCTGTAGTCTCACTCTGTTTAGA CT [335650] 335720 33 93.9 28 ...................A...T......... ATTTTTTTCAAGTCTCACTCTGTTTAGA CTC,CGGC [335739,335747] 335788 33 69.7 18 ..................C..CCTTTGC.G..G AGATCCAGCAGGAACCGC T [335804] Deletion [335839] 335840 17 51.5 0 .................---------------- - Deletion [335853] 335857 33 72.7 17 ..................GA.AC...ACA..GA AAAATCAAGGAATTTTT CC [335874] Deletion [335907] 335909 17 51.5 0 .................---------------- - Deletion [335922] 335926 33 72.7 21 .................CA..CATT..CT...G AAGAAACGGAAATTTATAACA Deletion [335980] 335980 33 78.8 14 .................C.T...CC..ATG... CCCTCAAGGTTAAC ATTTT [335998] Deletion [336027] 336032 17 51.5 0 .................---------------- - Deletion [336045] 336049 33 100.0 36 ................................. AATTTGAAAATGGGGTTAGATTATGGCACAATGATA 336118 33 100.0 36 ................................. CGTTTGGGTCACGTGATAAAATAGCCGAAAAATATT 336187 33 100.0 34 ................................. TTTAATCAGATTAAATGATCGCTTAACTGGCTAA 336254 33 100.0 35 ................................. AACGGAACACAAAAGCGGATAATAATCATCATTTC 336322 33 100.0 33 ................................. TAGAAAGTCTTAGCCATTTGGCTTTTTCGGCGT 336388 33 100.0 33 ................................. ATAATGGCAATAAATTTGATAATTCTTATTTAT 336454 33 100.0 34 ................................. TTATCATTTTAATAGTGTATGAATTAATATTAAC 336521 33 100.0 36 ................................. TACTAACATTTGTTTAAATACTCTACTTTTAACATT 336590 33 100.0 35 ................................. TTTTTGTGCATCAGCACCATGTAGTCTTAAATAAC 336658 32 51.5 0 ..........A.CC...-A..AGTCCGCC.GTC | ========== ====== ====== ====== ================================= ====================================================== ================== 21 33 81.4 27 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : ACTTGGACGGCTACCCGCCGTTTCTTTGGAAGTAGGTGAGAACTTGCTGATTTTGATTACTTATGATGTTGCTACAAGCACTGCCGGTGGAAGCAAACGGTTGCGTAAAGTAGCAAAAAAATGTCAGGATTATGGTCAACGTGTTCAGCATTCAGTTTTTGAATGTGTGGTTGATGCAACGGAATTGGTTAAACTTAAAAAGGAGTTAATCGATTTAATTGATGAAGAAGTTGATAGCTTGCGGATTTATCAACTAGGAAGGAACTACAAAAATAAAATTGAGCATATCGGCGCTAAAGAGAGCTTTAATGTGGAAGAACCTTTGATTTTTTGATAAACAAGTGCGAACCCCAAGCGCACATGAAAATACTGGGGGATTCGCACCAAATTTTGGCTGATTTTTGTTGAAAAACGACCTTTTTCTAATTGTATTCTAATTTTATAGAAGGAACTAAGGTGGTTTTTAAGTAGTTTCAGCATAAAATTAGGTGAAAATCACA # Right flank : CATTGCTGCAATTTTTTTATCAAACCGTTATTTTGAACCGTTATCTTTGCAAGCAAATCATACCAATGTATACGCTAATCTCTCTCTCTATTTCCCAATTTCGTTATAAAATTTTCAAAATAAGAACCTTATTATTCGTCAGATTCTTAGAAATTCTATACAATAAATAGGGAACAGAAAAGAAGTTACGGAGGGATGAACAATGAATAATGTTATGGAACAATTAAGAAAGTACGCACTTTTACGTGGAGTTGTTTACATTCTTTTCGGGTTGTTGATTTTATTTAACCCAAGAGATGTTTTTCAAGCGGCTGTTTATGTTATTTCAGCGTATATTGCAATCATGGGACTTCTTAATTTATACGATGGTTTTAAAGTGAAAAAAGCAACGGGCACTTACGGAATGAGTTTTTTAGGTGGAATTGTTTTGGTGATTGTCGCGGCGATTGTGCTGGTTTTTGCCAAGGGAATTGTAAGTATTTTACCGATTTTCTTAGGGT # Questionable array : NO Score: 7.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.07, 5:0, 6:0.25, 7:-0.74, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 162505-161189 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYM01000046.1 Erwinia sp. CPCC 100877 NODE_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================== ================== 162504 33 100.0 36 ................................. TACTATTGCGGTTGTCTCCTTTTGCAATTGGGCCAT 162435 33 100.0 37 ................................. TCAAAAAGGATCAATAACTGAAGGAGGAAAGAATAAT 162365 33 100.0 34 ................................. TTTTTGTTCCATTTGAATCTCTCCTTTAGTGAAA 162298 33 100.0 37 ................................. ATAGTGACGGATACGTAAATATGCACGTCGGCGTTGG 162228 33 100.0 37 ................................. ATACGCTGCTTTTCCTGACTCTTCTACTTTATATGTC 162158 33 100.0 34 ................................. TAGCGTTTTACCTTGCGTAAACGTCATTACAACG 162091 33 100.0 34 ................................. ATTATAAAGTTCGCTATTGTCTTGAATATCTAGC 162024 33 100.0 37 ................................. GTATAATGAAGAACTTGACGCGCCGCACTGGGTTAAA 161954 33 100.0 33 ................................. AGTTAAGCAAAGCAAGAAACGCGAATCAAAGAG 161888 33 100.0 36 ................................. CTACTAAAAGGAGGTAAACAATAATGGCAGAATCAC 161819 33 100.0 34 ................................. AATGCCTCTATTATCTTATCTGCAGTCACAGTCG 161752 33 100.0 35 ................................. AAAACTACAATAATTCACCCCATGACAAGCCAGAT 161684 33 100.0 36 ................................. GACGTATCCATGTTTGGGTCGTCTTTTTTACCAAAA 161615 33 100.0 34 ................................. AAAATATGTATAAAGTTTCTTATAATTCAGCTCT 161548 33 100.0 35 ................................. TGTTTGATATTTTTACAGGACTGGCGAAGGCTATT 161480 33 100.0 36 ................................. AATCAGTCCTGCCGGTTGGTCTGCTGGCGACTTGCT 161411 33 100.0 34 ................................. TACCCAAAAACGAGACGAATTTTTCTTTGGTTCG 161344 33 100.0 90 ................................. GATGTATTTTATATCTCTTTTTAAGAATCTTTTCAGTCTCATTCAGTTTAGAAATTCCATTACTAGGTTTAAATAGACCGTAAAAACTAT 161221 33 87.9 0 ..........A..C......CA........... | ========== ====== ====== ====== ================================= ========================================================================================== ================== 19 33 99.4 38 GTCTCACTCAGTTTAGAGTGAGTGGATTGAAAT # Left flank : TAGTATTTATCCGCTATATGTAAAAAAAGCTGAGAAGAAGAGCCGAACAAAGGAAGAAGTAGATGAAATTATTTTTTGGTTAACAGGTTATAATCAAGCTAGTTTACAGCAACAACTTGATAATAATGTGGATTTTGAAACATTTTTTGAAGAAGCGCCTCAGCTCAATCCGAATGCTTCTTTAATTAAAGGCGTAATCTGCGGGTATCGGGTAGAAGAGATAGAAGATGCTCTCATGCAAAAGATTCGCTATCTGGATAAATTAATTGATGAGCTGGCCAAAGGAAAAAGGCTGGAAAAGATTTTATGAAAATAAAGCCGCAGAAGCGCTACTTTTTTTGGTGCGAACCCTAAGTGCCCATGAAAGTACTGGGAGGTTCGCACCAATTTTTGCTTGAAAATACGGAATAAATCGTGTATCTTCTCATTATAATCTCATTTTTCAGAGAATATATTAAGTGAAAAGTAGGGAAAAAATGAAAAATGACCTGATTTTCACG # Right flank : ATTAAATTTATTAACACGCTCTTTAAAGTAAGTGGACTGAAAAGAAACGAAAAAAGCAGAAACATCACCTCGGCGATATTTCTGCTTTTTTGTTTTTAGTTAACTACTTGATCTGGTGCTAATAAAAGGACTGACTAATTCTGCCAAGCCTTGGATATTTCTAGTTTGAATCATAATTGTACCCGTACCATGGAATTCATTCACAACGCCTTCACCTGTTGTAAAGCCGAAGATACCGGATGCCACCTTAATATTATAATCTAATGACTCTGACCAGGCTACCACATGCTGGTTATCCACTACGAAGGGCTTTGACCCATCTAAATGAAGTTCAATAATATCGCCGTAGCTGCTAATTAATAATGAACCTGATCCGGCTGTTTCCATTACGAATAATCCGCCGGTACCGCCAAAGATTGCACCGCTAAGCTTTTGCCGCTTCATATTGTAAGAAACCGATTCATCACAGGCTAAAAATGAACCTGTGTTTAAACGCCAGT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCAGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //