Array 1 4014481-4015851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040269.1 Escherichia coli strain 1500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4014481 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 4014542 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 4014603 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 4014664 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 4014725 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 4014786 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 4014847 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 4014908 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 4014969 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 4015030 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 4015091 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 4015152 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 4015213 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 4015274 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 4015335 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 4015396 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 4015457 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 4015518 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 4015579 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 4015640 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 4015701 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 4015762 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 4015823 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTGCCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4041551-4042374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040269.1 Escherichia coli strain 1500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4041551 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 4041612 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 4041673 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 4041734 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 4041795 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 4041856 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 4041917 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 4041978 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 4042039 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 4042100 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 4042161 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 4042224 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 4042285 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 4042346 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //