Array 1 24510-22957 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSW01000102.1 Neisseria meningitidis 97008 gnm97008.contig.101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24509 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24443 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24377 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24311 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24245 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24179 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24113 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24047 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23981 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23915 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 23849 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23783 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23717 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23651 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23585 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23519 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23453 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23388 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23322 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23256 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 23190 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 23124 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 23058 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 22992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //