Array 1 175129-177842 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNS01000003.1 Cronobacter dublinensis strain cro946B2 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 175129 29 100.0 32 ............................. CCGTCTCGAAACTGGTCGAGGGTTATTTACCG 175190 29 100.0 32 ............................. ATTGCCAGCATTTTTAACGTGCCGGCGCACAT 175251 29 100.0 32 ............................. TTTGATCCTCATCAGCTCTTCAAGACGCTGAA 175312 29 100.0 32 ............................. GTCAGCCCCCGACAGCGGGGTGCCGGTATCGC 175373 29 100.0 32 ............................. GGCGAGCATAGCCCGTGCAGCATGAGGGATTG 175434 29 100.0 32 ............................. GCTTTGTTTTGCTGACGATTTTTATTTTATTC 175495 29 100.0 32 ............................. CAGAGGGCGGCATGAATAAGGATATTTGGCTG 175556 29 100.0 32 ............................. AAAGGCGGCAAGGCGTTTTTAAGGCGCAAGGA 175617 29 100.0 32 ............................. CAAAGAGCTGCAAGTCAGACAGCTGGAGGACG 175678 29 100.0 32 ............................. TTCCGGGCCGATATCCGGCGCAAAACCGAGAT 175739 29 100.0 32 ............................. CATTGATTCGTGAATAATATCGTCCGCCAGCT 175800 29 100.0 32 ............................. TTTTCGTTTATCGCCACTTCGTTGACGGCAAG 175861 29 100.0 32 ............................. GAGCTCCGCGAAAAGGCGCTCGCGCAGGCGCG 175922 29 96.6 32 ............................T TGCCGGTCTGGACGTATTGTTCGAGCTGCTGC 175983 29 100.0 32 ............................. CAAATACGGGGGATCAACAAAATGCAGGGTCG 176044 29 100.0 32 ............................. GAACGGTCCACAACATGCCGTATGTGATGGTC 176105 29 100.0 32 ............................. GTATCAGCACAGCGTGACGGCGCATTTTTGGG 176166 29 100.0 32 ............................. CACTTCACGACCGGCGCTGCGCAGCTTTCTGG 176227 29 100.0 32 ............................. GACTTGTGGCGGCAACTTAAACGCCAGCGCCA 176288 29 100.0 32 ............................. TACGTCCTGTCCTTATCCGGAGGTTGCAGCAG 176349 29 100.0 32 ............................. GCCAGTAGAGCGGCCTGCGGAGCGTCGCGTGG 176410 29 100.0 32 ............................. TCTACAACTTTAATGCAGAAACTGGTGAGTTC 176471 29 100.0 32 ............................. TTTGCTTACTTTGCGTTATTTAGAGAGACATG 176532 29 100.0 32 ............................. TCTGGCCTGGAAGGCCTGCCGCAGGACAAGCC 176593 29 100.0 33 ............................. AGACAGGATATCGAGGCGAGCGTGATTGGCGGC 176655 29 100.0 32 ............................. CGTACGAGGTTGAGACTACCGGTCCAACGTCC 176716 29 100.0 32 ............................. GACACGATGGCAGGCGCGCTGCGCTCGGTGCT 176777 29 96.6 32 ............................T TCTAAAATTTTAATTGGCATCCAAACTAAGGA 176838 29 100.0 32 ............................. GCTTTTTCTTTCAGTGGGTCGCCCTTCGCCTT 176899 29 100.0 32 ............................. GAATCAACTTTGAGGTAAACACCATCACCGAC 176960 29 100.0 32 ............................. TATGAGAAGTGGCTTAAGGGCTGCCGGTTTTC 177021 29 100.0 32 ............................. GCGGAGTGGCCGGGATGCTCGGTAAACTGGTC 177082 29 100.0 32 ............................. GGCATATAAAGATGCACTGGCAATGTTCCGAC 177143 29 100.0 32 ............................. CGAGCGCATCAGCACGTCGCGGTCCTCCGTGG 177204 29 100.0 32 ............................. TGGTAGATTGCCCGCGCGCTATCCAGGCTGGT 177265 29 96.6 32 .........A................... GTGGTTGTTGCCAACGGCTACGAGAACGTTTT 177326 29 96.6 32 .........................G... GTCGAAATAACCACATCACAGGTAGATAAATG 177387 29 100.0 32 ............................. GGCTTCCGCTCGGTTGGGAAATACAGCTAAAA 177448 29 100.0 32 ............................. CAAAACGCAACAGGTTCAGCGGGTTCACGGGT 177509 29 100.0 32 ............................. AATCTGTTCTGCCTGCTGGTCGCTGCGCTGGA 177570 29 100.0 32 ............................. CCTGTATTCAGCAGGTTCAGTTTGCGCAGGAG 177631 29 100.0 32 ............................. TAGTCCGAGTCTTTGCTCATGACGCACCCCAA 177692 29 100.0 32 ............................. GCCCGCAGCATAACGCCGAAATCCTGCAATTC 177753 29 93.1 32 ..A.............T............ CAAATGCACAGTCTAGTGAGTTCGCCCAGTAA 177814 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTCGGGCCTGAAGACGAAGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATTACGCTGCCTGTGTGTGTCGTCATGGACTTCCATTCACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGCTTAAAGAAAACAACAGCTTGTTTTTAGA # Right flank : GAACCCATTCGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTCAACCACCCGACAAAGCAAACATTCGCAACCCTCCCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAATGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204268-205945 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNS01000003.1 Cronobacter dublinensis strain cro946B2 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 204268 29 100.0 32 ............................. CCCGCACATGGCGGGCTTTCTTATTTGGCGGA 204329 29 100.0 32 ............................. TAAAGTATTTTACCAACATGATAAATGTCGGA 204390 29 100.0 32 ............................. TGCTCGACTTGAGCCTGGCGGATATCAAAAGC 204451 29 100.0 32 ............................. TCGACGACGTGCAGGCGGATATGGCCGAGAAT 204512 29 100.0 32 ............................. GCCATCGCAGCATCGCTTCGGCAAGCGCCCGT 204573 29 96.6 32 A............................ TTCTGCGGGTAGCTGCGCGCGGTCCAGCGCCG 204634 29 100.0 32 ............................. ATGCGTTCCCCTTTAGGGTATGCGCGCGCCAG 204695 29 100.0 32 ............................. CGGGTTTACCGTTTGGGTGTAATTTTCACGAC 204756 29 100.0 32 ............................. CAAGAGGGCTGCGATATTTTCCACACTGGCGC 204817 29 100.0 32 ............................. CCTACGCAAAATAAGGCGGACGATGACAAAAT 204878 29 100.0 32 ............................. CCTACGCAAAATAAGGCGGACGATGACAAAAT 204939 29 96.6 34 ..........T.................. GGCTACGAGATTTCGTGGAACTGGTATGAGACGC 205002 29 96.6 32 ..........T.................. CGGCGTCATAAGTCGTTTTGATATCAGTTTGC 205063 29 96.6 32 ............A................ ATTACGCGTGGCGAGTTCGCGCACAAAATCGA 205124 29 96.6 32 ............A................ TTTATTGAAATGGGGGATATCTCAGCAAAAGA 205185 29 96.6 32 ...........................T. TGAAAATATTCAGCTGATCCGCAACCGCTTCG 205246 29 100.0 32 ............................. TACTTAGCAATGTAGCCGGTGGCCGTTCCCAT 205307 29 100.0 32 ............................. CTGAAAGGGCGCTTCCCCTCAACAAAGGCCCG 205368 29 96.6 32 .....A....................... TTCATACCAGACTCAGTGTTTTGTGGTCAGGC 205429 29 100.0 32 ............................. AGCCTTTGCCTCGGCACTTAGCAGGATTTCGC 205490 29 96.6 32 ...C......................... GCGGGTGTCGAGCGCGTCGTATTAACGTCACC 205551 29 96.6 32 ............T................ CGCCTCGAATGAAGCGCTGTTGATATGCGGCA 205612 29 96.6 32 ............T................ TTCACTGTACAGGCTGCCGTTCCTGATGGCAC 205673 29 100.0 32 ............................. AATCACGATTTCCGGCACGCGGTTACCGAGCA 205734 29 100.0 32 ............................. AGTGCCATCAGCAATGCCACCCATAATATTTT 205795 29 100.0 32 ............................. ACGAGTTTCGCGCGCGCATCCAGTTATCGCCG 205856 29 100.0 32 ............................. CAATGAGACTGACCCTGAACGACGTCAAAGAA 205917 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 28 29 98.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCATCGAAAACGTGCCGCCGAGATTGCGCGGGCGGCTCGCCATCTGGCTGCTAGAACTGCGCGCCGGGGTTTATGTCGGTGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTATATAGTTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAGAAAAACCTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTAGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGAATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGGCACGCGAGAAATAACGACGATGAATTCTATGATGCCGACTTTTTTATAAAGGCGCAGGACATTATGCCTGACTGGCCAACCCATACGGTAGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGGCGTGATTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //