Array 1 303899-303352 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOB01000002.1 Meiothermus sp. Pnk-1 contig_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 303898 35 100.0 40 ................................... CTGCTCCGCCTTGCGAAGCATCTCCGCATACTCGGCGCGC 303823 35 100.0 40 ................................... TCGTCCGCGCATTCTCGGCGGATACCTTGGTCGCCGAGAT 303748 35 100.0 28 ................................... GCAGGGGTAGGGGTCCACCACCACCGCC Deletion [303686] 303685 35 94.3 39 ....................C..A........... GTCACCGCTGCGTCCCGCCCACTTGTTCAAGTACCACCC 303611 35 100.0 38 ................................... TCCACCACGGCCAGCCAATCGGTCTCTTGAATGACCTC 303538 35 100.0 40 ................................... GCGGGGCTATTTCCGCCGGGTGAGCACCCGCATACTCACG 303463 35 100.0 42 ................................... GCCACCCACCGGGGCAGCTCGCCGGGGCCACGAACCTCGCCC 303386 35 97.1 0 ....................C.............. | ========== ====== ====== ====== =================================== ========================================== ================== 8 35 98.9 38 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : CACCGGCAGGTGGATGGCCCCCTCGAGGCTCCCTCGCAGGTACTCGGCCTCGGGCCGCACGTCCACGATGAGGGGGTTTTCCCGGAGGAAGGTCTCGAGCATCTCGGCTTTGAGGTTACGCATACCCCCAGGATACGTCGGCCAAGGGGAAACCCGCAAAAAATCCCTGCGCGATCGCACCCCCTCGCTGGAAAAAGTGGGCACCATCCCTGTCTGGAAGGGCACAAAGCCCGCTTCTCAAAACCCGGCGTTATGTTTTGCGCAAAATGCTATAATCCTCCTAGCGGGGCCACCCGCAGCGCACCTTGAAAGCCAGTTTTTCCCTTCTCCATCGCAAATCCCTGCGACACAAAATCTAAATGTGCAGGGAAGTAAGCACCCATCGGCATAAATCCCGCTTTTCACCTCGCTTATCCACAGGGAGGCTGTGGATAACTCCACTTTCTCATAAATCTACCCTCCGGCACCCCTGTACAGGACGGGGTTTTATGGGGTATGCT # Right flank : CAGGCGGCATCATGGCCGTGGTCCGGTCGCAAGACTAGGTGTGTGCGTGGCCTGCCCCGTCCCGCGCATGGGCGGCGTGGATTGAAAGTTTATGCTTGAACCCGACATCTTTATTCGGGTAGCATGGGCGCTTGGAGCCGAGGGCGGCCAAAAGTGGTAGGCTGACCGGCTGGAGAGCTGAGGACACGATGCCAGCACGCACGGACATCAAGAAAATCCTGATCATCGGGTCTGGCCCCATCACCATCGGCCAGGCGGCGGAATTCGATTACTCGGGAACCCAGGCCCTCAAGGCGCTGCGCTCGGTGGGGTACGAGGTGGTGCTGGTCAACTCCAACCCGGCCACCATCATGACCGATCCCGAGCTGGCCGAGGGCACCTACCTCGAGCCCCTCACCGTGGAGTTCCTGGAGAAAATCATCGCCAGGGAGCGGCCTGACGCCCTGCTGCCCACCCTGGGCGGCCAGACTGCGCTCAACCTGGCCATGCAGCTTTACGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 63478-63223 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOB01000005.1 Meiothermus sp. Pnk-1 contig_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 63477 29 100.0 46 ............................. TGCAACTCCCTGTCACCCGCCTCCTCTGCTTCCTCGAGCTTGAGGA 63402 29 100.0 46 ............................. TGCAACTGAACAAACTCTTTTTTGCACTTGCTGCACTTGATCACCA 63327 29 100.0 47 ............................. TGCAACAAAATAAATATTGTTCAGCAAAAAAACGCGGAGTAAAAACA 63251 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================== ================== 4 29 100.0 47 GTCGCAAACAAAAAGCCCCGTAAGGGGAT # Left flank : GCAGCTTTTGCAGAAGAGGCTCGAGCCCACCGAGGACGGCGTGCGCATCTACCCCGTAGGCGGAGCGGTAGAGGTGCTGGGTGTGGGCCGAATCTCCGAAAACCCCGACTACCTGATCCTTAAAACGTGTTTGCCCTACGGGCAAAGCAACTAGCCCGCAAAAAATCCCTGCGCGATCGCACCCCCTCGCCGGAGAAAGCGACCACCATCCCCGTCTGGAAGGGCACAAAGCCCGCTTCTCAAAACCCGGCGTTATGTTTTGCGCAAAATGCTATAATGTCTAGCGGGGCCACCCGCAGCGCACCTTGAAAGCCAGTTTTTCCCTTCTCCATCGCAAATCCCTGCGACACAAAATCTAAATGTGCAGGGAAGTAAGCACCCATCGGCACAAACCCCGCTTTTCACCCCACTTATCCACAGGGAGGCGGTGGATAACTCCACTTTCTCATAAATCTACCCTCCGGCACCCCTGTACAGAACGGGGTTTTATGGGGTATGCT # Right flank : GCAACGCTCTCGAGGAGCAGTGCTGAAAGCGGTTGTGATAGCCTATAAGCATGCGAAGCGTAACCCTTCCGAACAGCGTCGCCGAGGCCCTAGAGCGCTTCAAGAAGGAACGCGGTCGCGGCTGGTCGCGGGAACTGATCAGCCTTCTTCGGGCGGAACTCGAGCGCGAACAGGCACGCCAAGAGTTGGGCTCGCTCCTGCGTGAAATTCGCGCTCAAAGCGGGCTGAGCGAACGAGAGGTCTACCAGAAACTTCGATGAGGCTCGTCCTCGATACAAACGTCCTGGTGGCGGGGACCTTGACCCAAGGCCCCGCCGCTAAGGTGTTGGACCTCTGGATCGAAGGCCGTTTTGACCTGCTCACCTCCGAAGCTCAACTGGCTGAACTCAAACGGATCTTGCAAACTAAGTTCAAAGCCCACATCTCGCCCGTCCGCCGCGCCCAACTGTTGGGCGCGGCTGCGCAAAGCCGCGATCCTGATCCAGCCCAAACATCGCCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //