Array 1 162795-160752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEL01000002.1 Salmonella enterica subsp. enterica serovar Kiambu strain 07-0618 NODE_2_length_385620_cov_3.25224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162794 29 100.0 32 ............................. CGCCCCTCATCCACCAGGGCGATGTGATTCCC 162733 29 100.0 32 ............................. TGGTAGCCGACGGGCGTATTGCGGGGTGCATA 162672 29 100.0 32 ............................. GCTGTTTTGACTTTGGATCGTGAGCAGAGCGT 162611 29 100.0 32 ............................. CGCGTTCAGACATTTATCAAAAAACGCGACGC 162550 29 100.0 32 ............................. TTTGCCGCCTCGTAGTAATCCACCAGGCCAGC 162489 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 162428 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 162367 29 100.0 32 ............................. ACAGTTTGTTGAAATCTACGACTTGAGGACTA 162306 29 100.0 32 ............................. GACAAACGCGCGGCTGGAGTCAGGATCAGATA 162245 29 100.0 32 ............................. GACGACAGTTATATGAAAACGCATTGAGCGGT 162184 29 100.0 32 ............................. TTATCGATCGTCCAATCGACCTGCATCTCGGT 162123 29 100.0 32 ............................. CGATTCCAGGCGAACGCGCGTCTCAGCAGGCA 162062 29 100.0 32 ............................. GACACTGGTCTATTATCGCCCACCGGAAGAAT 162001 29 100.0 32 ............................. GCGGGACTGTTAGGGATAGACCCCGGAGATTT 161940 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 161879 29 100.0 32 ............................. ACCAGATTAAAGTCGGTCTGGAAATGGTCATG 161818 29 100.0 32 ............................. TTATCTGGACAGGTGACAGCGAACACGAAATC 161757 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 161696 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 161635 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 161574 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 161513 29 96.6 32 .............T............... CCGGGTGCACGCTTTTATTTTTTATGACTCCC 161452 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 161391 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 161330 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 161269 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 161208 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 161147 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 161086 29 96.6 32 .......................T..... CACTTGTAATTCTTCGAGTTTATCGATGAATT 161025 29 100.0 32 ............................. ACGTTTATTCATCAAATGGGGAGATTCTGCTG 160964 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 160903 29 100.0 32 ............................. TTCCGCCATGACCGTTTCGGCCTCCAGCTTTC 160842 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160781 29 96.6 0 A............................ | A [160754] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179329-178935 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEL01000002.1 Salmonella enterica subsp. enterica serovar Kiambu strain 07-0618 NODE_2_length_385620_cov_3.25224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179328 29 100.0 32 ............................. GTAATTTTACCAAAAATTCTTTCTTTTTCTTC 179267 29 100.0 32 ............................. CCGCCAGTGCCGCCTTTAGAATATCTGTATTA 179206 29 100.0 32 ............................. GACGTATTGATAGTTTAGACAGTAAAGTTGAT 179145 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 179084 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 179023 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 178962 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAACTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //