Array 1 2915-2148 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEYQ01000012.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 2914 35 100.0 33 ................................... TTTTTCGCAATTTCCCCAATCTCCCGAATTCCC 2846 35 100.0 38 ................................... TCCTGATTGGGTGAGCCGATAGTATCTTTTTCTAGCAC 2773 35 100.0 37 ................................... GGCTGGATCCTTCACCGTCATTTTCGTCCCCAACAAT 2701 35 100.0 38 ................................... TGCTGCCCGTCTTGCTTTGAAACCTTTGATCCAGAAGA 2628 35 100.0 34 ................................... GGAAAGGGCCTTTTTGCGTCACAAACCCAGTCAC 2559 35 100.0 44 ................................... GTTTTGCATCCAACGCATATCGCCGGAAAAAGACGGCAATGAAC 2480 35 100.0 38 ................................... CGTTTGGGTAATTGGCATTTAATGCTAAGGTGGCGGGA 2407 35 100.0 40 ................................... AATGCCTGATAATTAGCTCTCCCGGTCATTTGTAAGGCAT 2332 35 100.0 41 ................................... AAATTTTAGCTTGCCTAATACGCTTAACTTCGCCATTTATT 2256 35 100.0 39 ................................... AATGTGTAGGGTTAATTCATGAATTAACCCTACAATTTT 2182 35 80.0 0 T..AA........A..T......C.....A..... | ========== ====== ====== ====== =================================== ============================================ ================== 11 35 98.2 38 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGCTGACAGGGGGACAAGAAGGCTGAAATCGATATATCGTAAGCTTTTCATTGTTTTAGCTCGACAAAGTTTGCCGCACCATCTCTCACTTATTAATAATAATTCCTAGTAAGCTAGCCCCTATCCCTAGTTCTTTCGTTAGCTTTTTGCCTAGAATTGCTAGATCTATTTCTAGTGAGAGAAGCCATAAGCCTTTGTTGGCAAGGTTTCTAGCTCGCTTGTCCCCCTGTCAGAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : GATGCTTAATTAATAAAAATCAATAAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTCTTAAACAATCGAGTTTTCTATAGCTTTATGTCCAAATATATAGCCATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCAACCACCGGCCTGAGCAGTACCACCTAATTAGCCCCGGACTCCTAAACTCCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAGTCGATAGCGAAATACAGTCCTCCTCCTCCGAGGAAATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAATA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 5832-5430 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEYQ01000012.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 5831 35 100.0 39 ................................... CGTATATTGGATTGGATCCAATACGCTTTTGAGCCAAGA 5757 35 100.0 40 ................................... TCAAAGAGGCCTTCTGGCGTCCATTTTTGACAAAAAATGC 5682 35 100.0 37 ................................... GAGTATTGTCCGGTTTGGACGGACTTTACCCCAAATT 5610 35 97.1 40 ................T.................. GGCTAATTCATCCTCTAGCAAATCCCTCAAATCTTCCCAC 5535 35 100.0 36 ................................... CCGAAAAGCTTTACAAGCTTTTGGATGGCGGAGCGA 5464 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 99.5 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : GAGGAGGTGTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATCGATGAACCAGCGATCGCCAAGGAACTAGAAGAAATTCTCGGCATTATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTCCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACAAAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGAGAATTATTATTAATTATGGCTTATTTTTCAGTATCCCACGAAAAATCGTTGTACAATCCTTGTACGGCCTAGTTTTGCAAAGCTAGT # Right flank : AGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAAAAATTTCAGAGGAACTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTGGGCATCGTTTATAATAGCCAATTTCCTGGTCCACAACTCAACTCGATCGATCTCGATCGAGTTCTCCACTGGCTACAAACTCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCTGTAGGGGCGAAGCATTCGGATAGAAAATCTACGGTTTCACCGATAGGTTACTGCCCGAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 49935-50186 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEYQ01000005.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 49935 36 100.0 36 .................................... ACTTTTGAGATTGACTGGGGAAAGGCTAGGATAACA 50007 36 100.0 35 .................................... CTGTTTGGGCCCTTAGTGACTGCATGGACCCTAGT 50078 36 100.0 37 .................................... TCATAATAGCAGGGATCATCTGCTTTGTCGCCACAGG 50151 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 36 GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Left flank : GTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAGGTAGGCACAATTATTTGGGCGAATGCAATTCGCCCCTACAATAATATTATTATTATTGTGCCAATGGTAGGGGCGCATCGCGTGCGCCCAGAATGTCCTAAGTAGGTAGGCACAATTATTTGTAGGATGGGTTAGCGGTAGCGTAACATAATCGGGCGTTGGGTTTCATGCTTCAACCCAACCTACGTTCATTTTATATTTAATTCCACCCACCTACTTATAGATATTTCGACAAAATTGAAAGGCAGAAAAAGGGTTTATAAAGAAACCCTTTTTCTA # Right flank : GAGTACCCCTTGGAAAGTCTCATCGAGAGGGGAAGACAGACCCCCAAATCGACGCACCTGCAAAAAGAGGGTTAAAAAGTGGTTCTGGGGGGGGTAAAATTCCCGATACCAAAGGGTAGAACCCTGACTGGGAGAGCAATCGACGCACCTCAACCAGAGAATCGGGGTTTTAGGTCGGGGAGGGGGTGCATCGATTTTCAGTCAAGAGTTAGGGGACAAGCTAGATGATGTAGAGATTTGGGGGTGGTTGAGGAGGAGAACCTCCCATCACCAACAATCTAGAGACAGCTTCTTCGGAAATCCCATAGAAGCGCACATCATCCTCTTGAGGATTGACCCTTTCTACTACTTTAGCGTACAGTTTCCGCCTCTCGATGTGTAATTAATTTTGCTTAAGTAATTATCTGTAATTAAGTAGCTGGTTATAATTAAATTAAAAATGGATTTTAGGTTCGATCCCCCCTGCCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 58588-58252 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEYQ01000005.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 58587 32 100.0 46 ................................ AGACTACTCGAAACCGTCGAGCCGGATTGGGGAATAGCCTTGATGT 58509 32 100.0 41 ................................ TGGTGGTTCGATTGTCCATATCGACACCTACGATAAGAAGT 58436 32 96.9 46 ......................C......... GGTTGCGAAAATTTCAAAGGCACTTGGTTAGAATGGGTGGAATTGC 58358 32 100.0 41 ................................ GGCGATTACTTGGACAAGCGGACTAAATGAGGGGTTAACGT 58285 32 75.0 0 ...................T.A....TTTGCT | T,A [58255,58264] ========== ====== ====== ====== ================================ ============================================== ================== 5 32 94.4 44 TTCCAACTAATCCTATTTGACCTAATAGGTAA # Left flank : CATTATCAGGGTGATAGAATCAAAGCCCATATCTTTTTGTGTATGTTGGCTTATTATGTGGAATGGCATTTAAAACAGTGCTTGGCTCCTTGGTTATTTGAGGATGAAGAAATTGATGATAGTTCTCTGAATGTGATTAAAGCTAGTCGCAGTGAATCCGCTCAATCTAAAGAGAGAAAAAAACGGAATCAAGAAAACCTCCCTGTGCATAGTTTTCGGACTTTGTTGGAAGACCTGGGGACAATTTGCTTGCATACAGTAGAATGTACGATTAGAGAAGGAAGTTATCGTTTTTCTAAGATAACTTGACCGACTGAACTACAACAATCATGCGTTAGATTTATTAGGGGTTTCCCTAATTTGTACCCAGTAACGGGGCGGCGGAAATTCTTTTAATCCCTCCTACAGCACAGGTTATGGCCTTTTGTCAACAGGGAAGTCCAGTAATAGGTAAGAGATAAGAGTAGGGCTAATTCCGGAATTAGCCCTACTTTTTTAGG # Right flank : TAGGTACTTAACTATAAACGGGATTATTTCGGCCAAAGTTTTTGAAATTTTCCCGCTTGACCATTATTCTCGTCTAGAAAACCTAGAAAATAAGCACAATCATCAGAGTCATCAGGAAAAATTGTTAATAATTCTAGGTATTGATGATTATTTTTGGGATACATTCGATGCCAAAGACAACCAATTTGATCGATACTTCCTGTCACCGAGGTTTTATAGATACTTAAATTATCCAATTTTTGATAGGCTTTGTGAAGCCATTTTATGGCTAGAGAATCATCTTTATCTTCGGCAATTCTTCCCCAAACTTCGACATTTTTAGGATGCCAACTTTCTCGCCAGTTAGCACTATTATCGGGAGTTCTGAGGATATCTTTTTGTAAGGACATCCATTGTTTAGCAATAGTGCGAACATCTTTGATAAAGGGATGAACATGAGTTAAATCTCTGACTTTATTATCGTTGATTAAAGAACTTTTATCCCCCCATTGCCAATGACA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCAACTAATCCTATTTGACCTAATAGGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 52754-51751 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEYQ01000009.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 52753 36 100.0 37 .................................... TCGTCATAATTAATCTCCTTTTCCTGTTTGTCTATGA 52680 36 100.0 41 .................................... CAGTTTTCGCAAAAATAAGCCATTTTGTCGTCCGATAAAGT 52603 36 100.0 37 .................................... CTACTATAATAACCAATGGTTGTAACTAATCGAGGCA 52530 36 100.0 43 .................................... AAATCTTCTAAAGAAGCTTGGTAATTAGGAGCGCTTCGGGTAC 52451 36 100.0 36 .................................... CCAAGGGCAGTGCGAAGGCTTTCTCCAAGATTTCCG 52379 36 100.0 37 .................................... TTTTTTGTAAAGGATTAGAGTCAAATTCTTCGACATA 52306 36 100.0 35 .................................... TTTAAATCAATAGGAATCTCAAAAGTTGCAGATGT 52235 36 100.0 38 .................................... CTGATAAAGCTGCGCGATATTAGCCACATATTCAGCCA 52161 36 100.0 36 .................................... TTGCCCGATCCGATAGCACCTATCCTCGGCCTGGTC 52089 36 100.0 38 .................................... ACAGAAGCGTAATCACCTGTAACTGATTGCACTTCCCC 52015 36 100.0 42 .................................... CGACTCTTGAATTCTTTGACCGCTTCCTTGACTAACGCTTCG 51937 36 100.0 39 .................................... TTGATAAGTTAAAACAGTCCACTCTTTTACTTCTGCTAA 51862 36 100.0 40 .................................... TTTCAGAGAAAGATAACTCACCATCAGTCTTTAGTTGGTT 51786 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 14 36 100.0 38 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : TACTTCCGTTAATGCGTTGTGATCTTTCCCCGAATGGTAATTTTCCGAGGGATCGAGGGTTTGATAACCGACTCCGGGGTGTCGGACGAGGGTGGCGATCAGGAGCATAAGTCGCTGGAACTCGCGACTATCTCGTTCACGCAGTGTTCTTTCCCTAGGGGATTTGGGGTGCTGAGTCATACAGATGCAATCGGTTCAGTCAAGGGGAAAGCCGATATAAATTTACTTCACTCCGAGGGCTAGAAAATCCGATCAGGACTGGAAAAATTAGCCGCTCGATCGAGGGGTTAAATTATTGGCTTTTTAGGGTATCATCGACTAGCGACGGATAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACGGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : TGAATGGGCTGATCAGTGGGGATTGATAAATATTTCTCGGCCAGATTGCTCTGGGAATACTAATAGTGTCTATGGGAATTTGATCAGCAAGGGATTTAAAAAGCTAAAAATATCTTTCACTCCTTACGATCTCCGGCACTCTTGGGCGCGGCGATCTTTTGATTTCGGCATGGATGTTACCATGTCCTCTAAAATGCTCGGCCATAGTACGAAAATTCACACAGAAATTTATCGCCATTGGATAGATCGAGATTCTTTTAATCGAATCTACCAGCAACTTATTACTCATCCTGATCGCCCTTTACCACCATGCTAAAAGCTAAATATTGGTTCACTTCTGTTTTATTATCAATTATTCTTAATTTAATGTCTTTTATCGCTTACTACATAAGCCAAGCTTTAATGGTAGTATTCGATCCATCTAAAGAATGGATTTTATATTATTTTTCCTCTTTAATCGCGACTTTATTTGTAAATTTTACAATACTCTGTTATTTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 114791-126739 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEYQ01000010.1 Microcystis aeruginosa NIES-298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 114791 37 100.0 35 ..................................... CTTATTTTGCCAACTTCCCCCCTCTAACCTTGATC 114863 37 100.0 36 ..................................... TCGATCGCCGGTCGGTCCGGTTCATCGGGGGGAAGG 114936 37 100.0 39 ..................................... ATGTAAACAATCGAGTAAACGAGTTACTAGCAAGGATTG 115012 37 100.0 35 ..................................... ATCTAGTTTTTTGGTAATTATGCCTAGTCGTTCGT 115084 37 100.0 35 ..................................... ACATCCTCGCTGCAGCATGATTGTGGGCAGCACTA 115156 37 100.0 35 ..................................... TGGGAACCGGGCTGTAAATTTGATGAGGCCTTTGT 115228 37 100.0 43 ..................................... ATAAACATAGGTAGGGCAGGTAGGGCAGGTAGGGAGAAAGCAT 115308 37 100.0 33 ..................................... ACTGCCATGACACTTAAATCGATGAGAGGAGGG 115378 37 100.0 35 ..................................... AAAAAGAAAATAAAAAAAGCTACAAAAAACAAGAA 115450 37 100.0 35 ..................................... AAGCCTTAAAATTTCATTTAAGATTTCCTGAGATT 115522 37 100.0 35 ..................................... TTTCAACCAATCGGCCACATCAAAACCTTTTTTAG 115594 37 100.0 36 ..................................... TACTATTAGGATTGCGAAAAACTTCTTTAATTGATC 115667 37 100.0 36 ..................................... GCGACCGGGATCGCCTTTTGGACCTTGAAAAACACA 115740 37 100.0 42 ..................................... CGCCATTTATCGAAGCCGTGGGGATAACCTAATAATTCCAAA 115819 37 100.0 37 ..................................... ACACATTGGGGACATGAAAACTAGGCAACTATTCCCT 115893 37 100.0 35 ..................................... TTTCAATCGAGCGAGTATTGCTTGAGTGCTTAGGC 115965 37 100.0 35 ..................................... AACAGCGCAAAAAGTCCCCACAGACTGCTGCCCAG 116037 37 100.0 40 ..................................... CCGATCTCTTTAAATCTCACTCTAGCCAAAAATGTGTTCC 116114 37 100.0 36 ..................................... CCTCTAAAAGCACTTTTTCTCTGTTTACGATAACGA 116187 37 100.0 40 ..................................... TTAAAATCTTGCCGATTTCTCGCAGCGGATACGGCCGCAC 116264 37 100.0 34 ..................................... ATTGCTTACATATATTTCGATATAATTCGGCTTG 116335 37 100.0 34 ..................................... CCTATTGAGGAAGATGAGGAAGACGAAGATGATG 116406 37 100.0 33 ..................................... GAACTCTAGCGATTGCGAGGACGGCGAAACCGT 116476 37 100.0 39 ..................................... AAACAACCACTTTAGCAAATTAGGTGATTTACTTAAAGT 116552 37 100.0 42 ..................................... TATTTAAAGACTTTTCGATCCCTTTAGCAATTTGCGTCCCAA 116631 37 100.0 34 ..................................... TTTTAGAAATTCATCCTAATCTTGATTAAATCCT 116702 37 100.0 36 ..................................... ATCCCCTCACCTCTCAGTCCATCCCCTCACCTCTCA 116775 37 100.0 31 ..................................... TTGATCAATTAAAGTTACTGGATTGTCAGTC 116843 37 100.0 34 ..................................... CCTTCAAAACTTCGGTTTGAACGCTAGTTAAATA 116914 37 100.0 35 ..................................... AAGCGAGGGATTTAGGACTTGAGGAAATTGAACAA 116986 37 100.0 35 ..................................... GAATAGTTGAAGCGCGGGCATCTAAATTAGAGAGG 117058 37 100.0 35 ..................................... GGAATATCCTGTAGATATGTACTTTTATAAAGAAA 117130 37 100.0 33 ..................................... ATAAGTTTGGGGTCAATCAGGGCTATTCTAAGT 117200 37 100.0 36 ..................................... GGGGCATTAAGCAGATATACCCGAACGATGATGATG 117273 37 100.0 34 ..................................... GATATTCCAGGACAAGCAACGGCGGCGACTTCTT 117344 37 100.0 35 ..................................... GCGGGAAAGATTAATCAAACTTTGGATAAATACGA 117416 37 100.0 35 ..................................... TGATCTTAGTGGCACTAAATCAATTCAGGCAAATC 117488 37 100.0 34 ..................................... AATTTCCAGCACGCGATCGGCAATCACAGACCTG 117559 37 100.0 33 ..................................... TAATTAAGAGAGTTTTTTAAGTAAATAGGACAA 117629 37 100.0 34 ..................................... AAAGGCTCAATTAGGCAAAAATCCTTTAGCTAAA 117700 37 100.0 35 ..................................... GGCTTAGACTACGATGGGCCAAGCATCCCCCTGAA 117772 37 100.0 34 ..................................... TTTTGGGGAGAATTTAGGATGATTTTATTATAAA 117843 37 100.0 34 ..................................... CCAATCATCCTCAATCTTAGCGGCCTCCACATAA 117914 37 100.0 35 ..................................... TCACCTTCACCGCCACCCCCGACAAAGAAAACCAG 117986 37 100.0 35 ..................................... AATTGGAGAATATCGGTATCTTTGAGGGTGCGCTG 118058 37 100.0 34 ..................................... GATGAGATGAAGGAGCACTCTAAACAATACGATA 118129 37 100.0 36 ..................................... ATCTAAGTATCGCCAGACAGCCCATCCTAGAAGCTT 118202 37 100.0 37 ..................................... AATACCTATTAATATTGTTACGTCCATGCTTTTAAGT 118276 37 100.0 34 ..................................... TATAGACACAGCTATAGAAGACTATAATCCAATT 118347 37 100.0 36 ..................................... ATCTATCGCAAAAACTTCGCTGATTTTTCCGCACCA 118420 37 100.0 38 ..................................... TTGTGCAGAAGAAACTGACTGGAAGTATGTAGCTGGAA 118495 37 100.0 35 ..................................... AATGCCTTATAGAGGAAAAAAGAAAATAGAGTAAA 118567 37 100.0 35 ..................................... GCGATCAATCCCGATGGATCAGTGGAATACCAGAT 118639 37 100.0 35 ..................................... AAGCTTTACAAAAATTAATATTTTTAAATAACCAT 118711 37 100.0 36 ..................................... CATCGGTGTGACAGGTGTTACACCCGCCAAAACCTT 118784 37 100.0 38 ..................................... TGAATACTTGCGACTAAATTATTAAGATTAGAAATACT 118859 37 100.0 34 ..................................... TTTGAGTTGATGGGGACTGAAAATCCTGTAGAAG 118930 37 100.0 39 ..................................... AGAGATAAAGGTTTTGCCGTAGCTTTTGAAGCGGAACAA 119006 37 100.0 35 ..................................... TTTGAAGAAATTGGGCAGAGAGTTGTAGAAGGATT 119078 37 100.0 37 ..................................... AACTTCGGTGACTGGAAGTGCCGAAGCCGGAGCTAAA 119152 37 100.0 35 ..................................... CTGCCACTGGGCCGGGATTGATTTTCTTGCCTATC 119224 37 100.0 37 ..................................... AGCTTTAATCCAGCTTCTGCGCTAGATTTTATTAAAA 119298 37 100.0 35 ..................................... TTGAAGTGGAATCTGGGGAATCCCAAGAAATTATT 119370 37 100.0 36 ..................................... CGTTACCTCGGTATTTTCTCGGCGGCTTTATTTATT 119443 37 100.0 35 ..................................... ATGGCCGGCGATCGGAAGGGGTGGAAATGTTCGAC 119515 37 100.0 33 ..................................... TGTTGAAGAAAAATTAGATTTAGGGATTACCTA 119585 37 100.0 35 ..................................... CAAAAAAGCAATAAAAGCCATTAGTAACTCGTTTT 119657 37 94.6 36 .C.....................C............. AACATGAGCAGTAAACCACCGATCAGCTTCCGACTT 119730 37 94.6 36 .C.....................C............. TTTTATTGCATGGATGCAATCCTTAGAAGCTTGCGG 119803 37 94.6 40 .C.....................C............. TCCCGGCCCAGCCAAAAATCATCCCATCTCGCTCTACAGG 119880 37 94.6 35 .C.....................C............. ATAATTTTTAGCGGCCTATCAGGCAATTTTCCCGG 119952 37 94.6 36 .C.....................C............. GCTGTCTATCTTGCCTAGTTCTTTCCCCTTACCAGT 120025 37 94.6 35 .C.....................C............. AGAGTAGTAAGGAAAGACGACGGTAACGGCAAAAG 120097 37 94.6 36 .C.....................C............. ACTCAGTAGGCGAGGTGACAGTCTGTAAGCGCAATT 120170 37 94.6 35 .C.....................C............. ATTTGATAGCCGATTAAATCGGTCCCGGACTCGAA 120242 37 94.6 35 .C.....................C............. CTAGTATTCAATCTTTTCATATTGGCTACCTAGCT 120314 37 94.6 34 .C.....................C............. TTGATAAGGTTCAGGCATCCCTGCTTCCCACATC 120385 37 94.6 35 .C.....................C............. TAAATTATGCTATCATCCAATTCTGTTTCTGTCAA 120457 37 94.6 37 .C.....................C............. TGATAGCTCGATCAGTGCTTAAATTTTTGTACATGGG 120531 37 100.0 34 ..................................... TAACGGGCTTATCCCAAATCGGACGATCCGTAAC 120602 37 100.0 37 ..................................... AATGGTTTGCGGCGATGCTTCGCTACTTTTTTGATGA 120676 37 100.0 36 ..................................... ACGACCAAATTTGGCCAGCGCATAGTAATTGATGCA 120749 37 100.0 42 ..................................... ACAAAGAAAGACGCTTTAGAATCCCTCTATGGACTGTTCCAA 120828 37 100.0 36 ..................................... AAGTCAAAATGACCTGGAAAAAGTTTTTAACGGACT 120901 37 94.6 35 .C.....................C............. GGCTGCGGCTGACTTGACAATCGAGCCTGCATTTT 120973 37 94.6 35 .C.....................C............. TGTCGGTGAAAAGGCTTGCTACATAAGGCTTTCAA 121045 37 94.6 34 .C.....................C............. GCCATAAGTTTTAAGTGTAGGATAGTATAATATA 121116 37 94.6 39 .C.....................C............. TACAGTTAGCAAAAGACTGTAAACTTATCAGTACACAAG 121192 37 94.6 36 .C.....................C............. AAAGGCTTAGGGAACACCAAAAACCAAAGAATAACT 121265 37 94.6 34 .C.....................C............. TTGTGAATACTGCAATAGCCACAATAGATAGAAT 121336 37 94.6 33 .C.....................C............. AGGATTGCTAATAAACTCTTGGCGGGCAAAATC 121406 37 94.6 34 .C.....................C............. TTAGGATCAATCCACCAAGAGATAAAACTAGCTA 121477 37 94.6 33 .C.....................C............. CATACTTTAACCCCTTCTTTAATCTCGAAATCT 121547 37 94.6 33 .C.....................C............. CCGTGCCAGTAAACCCATTATCAACAGCCACTT 121617 37 94.6 36 .C.....................C............. ATAGTCCTTGCTCCTATTGAGTTTCATGCTTTTATT 121690 37 94.6 34 .C.....................C............. AAGATTTTGAGTTCATCATCTAAATTATCATCTA 121761 37 94.6 35 .C.....................C............. TTGTATCGCTAAAAAAACGATGCCGGGCAGATGAC 121833 37 94.6 40 .C.....................C............. GTGAATGCCGGTTATTTCGCATAATTTTGTATTTGCGCTG 121910 37 94.6 35 .C.....................C............. CCGGCATTGGGGATTCGGATTGCTCCTTGTAAAGA 121982 37 97.3 40 .......................C............. TGATACGCGTATAAAGCCAATCGGGGCTAGATCGCCTGAT 122059 37 97.3 35 .......................C............. GCGTGCCATAGTTGTCTATCCGTTGTCTATCTGTC 122131 37 97.3 36 .......................C............. GATAATGGGTTTACTGGCACAGAACAAGATTGGCTT 122204 37 97.3 35 .......................C............. AACGTGCCATTCTACTCCTATTGTAGTCCATAAAG 122276 37 97.3 36 .......................C............. AAAGAAATCCCCAATGATCAGATAGAGTCTTTCCTT 122349 37 97.3 36 .......................C............. GGTGTACTCAAACGGATACATGGGATTAGTGTAGTA 122422 37 97.3 35 .......................C............. TTAAATCGTCTAAGGAGAAATCTGAATATTAAAAA 122494 37 97.3 36 .......................C............. CCGATGCCTGATACCCAATGGGCAGAAATTCCTGTC 122567 37 97.3 35 .......................C............. AAAACCCCCATTGTATCTGGTAATTTTACTATGAT 122639 37 97.3 35 .......................C............. AAATTATCGGATGACCTACCTAGCGCGTATGCAAG 122711 37 97.3 34 .......................C............. ATTAAAGATTTCGCGGCTTCCACATTTGAGCCGA 122782 37 97.3 35 .......................C............. ATCTTCCTATCGGCCACGGAATCGATCGAGAATTT 122854 37 97.3 41 .......................C............. GGCCTCATGCCTTTCTCAACGACTGTTGACATTAGAAAAAA 122932 37 97.3 41 .......................C............. ATCAATATCTTTGCAGTACACCCGCCGTGTATGTGGCGATC 123010 37 97.3 36 .......................C............. GAGCGATCGCCACCACCCTCTATCTCTCGGCTCAAA 123083 37 97.3 36 .......................C............. TTTTATAGACAGTGACCTGATTAAAAAGATTTTCTT 123156 37 97.3 35 .......................C............. AAAGACCTCTAGGAGGGCCTCAAATTCCGTTAAGA 123228 37 97.3 34 .......................C............. CCCGTTACTCATCCCTTTGCTACCCGCCCGCCTT 123299 37 97.3 36 .......................C............. CCGGCATTGGGGATTCGGATTGCTCCTTGTAAAGAA 123372 37 97.3 35 .......................C............. CCGGCATTGGGGATTCGGATTGCTCCTTGTAAAGA 123444 37 97.3 40 .......................C............. TGATACGCGTATAAAGCCAATCGGGGCTAGATCGCCTGAT 123521 37 97.3 35 .......................C............. GCGTGCCATAGTTGTCTATCCGTTGTCTATCTGTC 123593 37 97.3 36 .......................C............. GATAATGGGTTTACTGGCACAGAACAAGATTGGCTT 123666 37 97.3 35 .......................C............. TATCTGCTAAAAGATTTATAATCTTTATTGGTCTA 123738 37 97.3 35 .......................C............. GTAGAAAATTGGTAGAGATAAGTAGCCGCGCCACT 123810 37 97.3 35 .......................C............. CGATAACAAGCCGATTAGCAATAGTTTTAGATGCC 123882 37 97.3 34 .......................C............. ATCAGTTACCAGCGATTATCAAGTAATTAGGAGT 123953 37 97.3 34 .......................C............. CATCTAGATCCCGCTCGCAGATAAGAACTGCTGA 124024 37 97.3 36 .......................C............. AAGTTCCCAAAAATCACAGCCCCAAAACCTTAAAAC 124097 37 97.3 37 .......................C............. ATTGAAAATATGAGTTCTAAACCGCCCCCACAAAGCC 124171 37 97.3 32 .......................C............. GAGTAAATCGATGAACCTATCTACTATTAAAA 124240 37 97.3 39 .......................C............. ATATTCTGGGATGATGATAGTAGAATTAGAATTCTCGAA 124316 37 97.3 34 .......................C............. ATCTTTTGGTAGCCACTGGCAGATTAAATCTTCT 124387 37 97.3 35 .......................C............. TTGGCTTTTTGCCAATTCCCCAAAAGCTTGTCTTT 124459 37 97.3 34 .......................C............. TTAAATCACTATATTCCGATTCACTGGCTAACCG 124530 37 97.3 35 .......................C............. CTAATATTTCCCGTGTTTTGGATAGAATAAGTGTT 124602 37 97.3 34 .......................C............. TAATCGATAGCCTATCTGCTCTAATTCACGTTTT 124673 37 97.3 35 .......................C............. GCGGCGATGCTTAAGGCTTCTCACTTCCAAGAATG 124745 37 97.3 37 .......................C............. AGTAACCATTGATCATTAATAGGAGTAAAAAATGTCA 124819 37 97.3 35 .......................C............. TCACTCACCCCGCTTTACTAGCATATCACACTTTC 124891 37 97.3 33 .......................C............. GCGCCAATTAGGAGGTGGCGATGAATGCAAAAT 124961 37 97.3 37 .......................C............. TCCCCATTTTCCCATCTGACAATAGTTTTCGGGTAGG 125035 37 97.3 35 .......................C............. ATCGAAGAGCTACACGCTGAAAAAGAGCGTGATAT 125107 37 97.3 35 .......................C............. TCGAGTCTTGATTTTTTCCATCTTGATAATCCATT 125179 37 97.3 35 .......................C............. TTTCCCGGGTTTTCCGTCGTTTCCGGGCTTCCCGT 125251 37 97.3 38 .......................C............. GGGAATCAGAATATGATGGGAAGGCTCGCCGGGTGTGG 125326 37 100.0 34 ..................................... TAAGTGCGTCCCCCTTGAGGGGTTTTCCTTTCTC 125397 37 100.0 42 ..................................... ATCTAACTCATTATCTAGGCTATCATCTGAGTTTTCATCTAG 125476 37 100.0 34 ..................................... TCAAGGAATAATCAAGCAAATGCCCGGCAGAAAA 125547 37 100.0 35 ..................................... TAATTGCCTGAACGCTGTATTGCAAGCTCACCAAA 125619 37 100.0 35 ..................................... CCTTTGGTAACAGTAAAGCCTAAAGCTGTAATAAG 125691 37 100.0 36 ..................................... CTGCGAATATTTTTATAAGCACCATACATAATATGC 125764 37 100.0 35 ..................................... GATCTATTTGTTGGTCGGTGATATTCCAATTAAAA 125836 37 100.0 34 ..................................... TTCATATTTTTGTCCCCATTTGTAAACAAGAATT 125907 37 100.0 35 ..................................... AGACCAAAGAAGCATTAAGAGGGCATAATCCCTAA 125979 37 100.0 36 ..................................... AACGATTTCTTTAGAAATCTCTAGGGAGGGTGTAAT 126052 37 100.0 38 ..................................... TGCCATACTTATACTCCGTATTAGTCTCCGGCTCCCCC 126127 37 100.0 35 ..................................... TTGGCTAGAGACCCGGCAATTTATATACAAGGGTC 126199 37 100.0 36 ..................................... TTCGCTCTCAAGCTCTTTAATTCGGTCTTTTAAGCC 126272 37 100.0 33 ..................................... TATAGAGCGTTAACAATATCTACAAAGTCTGAA 126342 37 100.0 35 ..................................... CTTGAGTGACAGGATATTTTCCAATCGCGAAAGTT 126414 37 100.0 37 ..................................... TCCCAATAAAACAATAACCATCCTCTCCATCATCACG 126488 37 100.0 34 ..................................... GAGCTAGAGAATTTCACTCGCAACCTGGGGGGAG 126559 37 100.0 35 ..................................... TACTTTGGCACTAAGAACAAGATAAACACTAAAGG 126631 37 100.0 35 ..................................... ATTATCTTTATATTCTTCATCCCAGTTAACGGTAT 126703 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 165 37 98.4 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTATCAGTTACGACATTTCCGATGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCCAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAACGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTATGATTGGTTTATTGCGGGTGCGGCGCATACGAACCTTGAAAACCCCATAGCGTATAGCTTTTACCACTGGGCG # Right flank : CTGGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATAAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCCCCATACCTATTACCTAGCATCATTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCTACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCTTGGCTAAAAT # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //