Array 1 21848-20599 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJAF01000012.1 Corynebacterium mastitidis strain 16-1433 12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21847 29 100.0 32 ............................. TTGCGGAGATCACCGAGGCGGTCACCGCACTC 21786 29 100.0 32 ............................. GCCGCGGTTCCCTCCATCCGTAGCAGGGTGCG 21725 29 100.0 32 ............................. TCCGCGCGGTTGCGGTGCGCGGTGTGCGGGAG 21664 29 100.0 32 ............................. GCCGCTGCGGGCCTCGTTGATTTCGTCTCCCA 21603 29 100.0 32 ............................. ACGCCCTAAGCGGAGAGGGGAATTAGGCTCAA 21542 29 100.0 32 ............................. ACACCATGCGGTGAACACACCGCCCACCCAGC 21481 29 96.6 32 ............................G AAGGGCTCCTGGGAGAATCCCTCGCTGCGCAC 21420 29 100.0 32 ............................. TGGTGGGCGCTTTGCCCGCCACCGAGCGTGGG 21359 29 96.6 32 ............................T GCCGCCTGGTGGCGGGCGGTTCCCAGGCGCAT 21298 29 100.0 32 ............................. TCACTCGTGGCCCAGTTCGCGGGGTCCGCGAT 21237 29 96.6 32 ............................G TCGGGTTGGACCTTGCGGCACATCGCCAGCAC 21176 29 96.6 32 ............................G ACCACCAGTTTCCGGGTGGTGCCGGAAAACTC 21115 29 100.0 32 ............................. CACGTCACGGCCTGCTTGGCATACGCGATGAT 21054 29 96.6 32 ............................G TCCAGCACGTCGATCTTCTCCGCGAGGGACTG 20993 29 96.6 32 ............................G CGTAGTAGCGGCCCTGTGAATGTGGACAACTC 20932 29 96.6 32 ............................G TCGATCAGGCCAGACATGATGGTCATGGCTCA 20871 29 96.6 32 ............................T CCAGGAGGCCACCCAGTGGCTTGAACAGCACC 20810 29 100.0 32 ............................. GCGACCCCGCGCGCGCCGTTTGTTGGCTCTGC 20749 29 96.6 32 ............................G TCCACGTGCAGCTCGATGGGACCTTCGAGTGG 20688 29 100.0 32 ............................. GCACCTGTCCTACCCGTTTAAGGGAGGAATCC 20627 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTATTCCCCGCGTATGCGGGGGTGAGCCC # Left flank : AGCGCACCGTTGACGAGGTGGCGGCCGAATACCCCGACGTGACCGTGGAATACCACCACATCGACGCCGCCACCATCTACATGGTCACCGACCCGCAGCGCTACGACGTGATCGTGACCGACAACCTCTTCGGCGACATCCTCACCGACCTCGCCGGGGCCATCACCGGCGGCATCGGCCTGGCGGCCTCCGGCAACATCGACGCCTCCGGGGCAAACCCCTCCATGTTCGAGCCCGTCCACGGCTCCGCCCCCGACATCGCGGGCAAGGGCATCGCGGACCCCACGGCGGCGATCCTCTCTGTGGCGCTCATGCTGCGCCACCTGGGAGACGAGGAAGGCGCGGCGCGGATCGAGCGGGCCGTTGCCGACGACGTGGCCCGGCGCTCCGGGGACCTTGTGACCGCAGAGGTAGGGGATCGCATCGCTGCGGCCGTGTAGGCCCGGGACAAGTTGTATGTAATATTGGGGGCGGGCTTGTAAAAGCGCAGGTGAGCAAGT # Right flank : TAAGTCTACGGCGGAGGATCAAACCGCCCCGGACGACTCCACGGAGACCGACCCCGGCAGGGGAAACTGGGCCGGATGCTGACTTTGGCGCGGTACTGCCGGTCATCGCCCGCTCCGGATACGTGCCCACCCCAGCGACGTGGGCCTAGACCTACGGGCATGTGCCAGGGTCCGATTCTAACCCGGTAGAAGGACAGTAATCCCCACAGGCGTGCGGGTGGCTATCCCCGAGGAGCACGTAGGGTACATCACCCCGCGCTCCGGGATGGCCTCTCAGCGTGGACTGACGGTGCTCAATGCTTCCGACGCAGGTTACTGGGGTGAGATCGAGGTGTTACTGGTGAATCACGGGCACGAAGTGGTGGAGATTGAGGTGGGACGCGCATCGCCGTTCGTCATCCACTCCATCATCGCCCCGAGATCAAGCAGGTGGACGCCCTGCCCGCCACCGAGCGCGGCAAGGAAGAATTCGGCTCCACAGGGGCCTAGCTAGGCTAGGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48702-49095 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJAF01000005.1 Corynebacterium mastitidis strain 16-1433 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48702 28 100.0 33 ............................ CTCATCGTGGTAGGTGATCTTCGGCGCGGCGGC 48763 28 100.0 33 ............................ GCAGGCGCTGCGTCATGAGACGATGCGCAAGGT 48824 28 100.0 33 ............................ TGTAGTGCGCCAGGTGCCCCGGCTCTCCCAGGA 48885 28 100.0 33 ............................ CGACTGGAAACGGAACGGGGACTCGTCATAGCT 48946 28 100.0 33 ............................ CGGCGGAGTGGTCCCGGGTGAGCCTGCGACGAT 49007 28 100.0 33 ............................ GTTGTAGGGCTGGTTGCCGGGTGCGTGGGCGGC 49068 28 89.3 0 .....................A...AT. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTGTTCCCCGCGTATGCGGGGGTGAGCC # Left flank : GGATGAACTGGGGAGAAGACGTGGGGGAATACCCATGATGGTCCTGGTAGTAACCGCCTGCCCCGCGGGCCTCCGCGGCGACCTCACCAGGTGGCTCATGGAAATATCCCCGGGCGTGTTCGTGGGAAACCCCACCGCGCGGCTACGCGAGAACCTATGGGACCGCACCGTGACACTGGTCAAGGACGGGCGGGCCCTGCTGGTGTACAGCGCCCACAACGAACAGGGAATGGAGTTTAGGACGCACCGCCACGACTGGCAGCCCACCGACTACGAAGGACTCACGCTCATGCTGCGGCCCCACGCCAAGCCGCCCGAGGCCAGGCGCAGGACGGGGTGGAGCACGGCGAGGAACATGCGCCGAGCGCGGAGGTGAAGGCAGCGGTGGGTGGAGTGGTTGATTGACGCGAACCGTTGGTGCGGCCAGGGCAGCGGAGGGGCGTGAAGGCAAGTTGTAGCTAGAATAAGGAATCGGCTCTTATTTCTGCTGGTCAGGAAGT # Right flank : CGTACATGCACGTCTACGATAGTTCCTCGAGGATTGATACCGGCGTGCCCGCGAACCCAGATTTCCTCATAGACCAGGAATAATCCAGTATGGGGCAGAATTTCATTTCCGGTGCAGCAGGCTGTATATCCGCTGTCGGGACAGGCCGGACGCGCGGGCCACATCCCCGACGGGGCTACCGGCGCGCACCTGGCGCAGCACCTCCTCGCGGCGCTGCTGCTCTAGGGGTGCCAGCTCCGCGCGGAGAGCGGTAATACGCTGCCCCAGGTCCGTTAGGGTGGCGTAAGGCTCGTCTTTAGAGGGCATGGTTTTCTACGGTAGCCCAGAACTTATCGTGAGTGATACCCTGCGTGCCCGCCAACGGAGGCTGGTGCGCTCAATCAGTTCATCCGCGATGGTGTCCCCCGTGGGAGGCGAAGAAGTCCAAGTGTGAGGGGCTGACCTGCGAGTGTGCCGCGCACTGCGTGGCCGTCCAGTACACCCGACCCGTTTCTAGGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //