Array 1 107451-106280 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJG01000010.1 Salmonella enterica strain BCW_5834 NODE_10_length_213553_cov_4.51706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107450 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107389 29 96.6 33 .......T..................... CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107327 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107266 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107205 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107144 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107083 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107022 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106961 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106900 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106839 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106778 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106717 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106614 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106553 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106492 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106431 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106370 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106309 29 96.6 0 A............................ | A [106282] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125198-123583 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJG01000010.1 Salmonella enterica strain BCW_5834 NODE_10_length_213553_cov_4.51706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125197 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125136 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125075 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125014 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 124953 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124892 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124831 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124770 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124709 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124648 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124587 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124526 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124465 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124404 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124343 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124282 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124221 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124160 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124098 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124037 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123976 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123915 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123854 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123793 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123732 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123671 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123610 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //