Array 1 258249-258942 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VNHV01000001.1 Maritimibacter alkaliphilus HTCC2654 Ga0131271_101, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    258249	    36	  88.9	    29	..G....T.CA.........................	CAGACCCGCGCACATAACCGCCTTTCTGG 	A,A [258254,258259]
    258316	    36	 100.0	    29	....................................	CTTGGGCATCGTGTCAGGTGTTCTCTGGT 	
    258381	    36	 100.0	    30	....................................	CTGCTAACATGTCTCTCACTCCTGCTGTGG	
    258447	    36	 100.0	    30	....................................	GTTGAACTGGCTATCCCTATCAACTGGCCG	
    258513	    36	 100.0	    30	....................................	CGCAACTCAGGACGAGGTGCGGCAGCAACT	
    258579	    36	 100.0	    30	....................................	TTTTATTCGTGGGGCTGGCTCGCCTCACCA	
    258645	    36	 100.0	    30	....................................	CACCCATCGCTCGTCTCCTTCTCTGGTGTG	
    258711	    36	 100.0	    29	....................................	GCCGTCAATGTCAATCGTTTGACCCGGCG 	
    258776	    36	 100.0	    29	....................................	ACCACGACGCGAATGTGTGGCGAAGGTCA 	
    258841	    36	 100.0	    30	....................................	GCCCCTCCTGATCCATGGGCGTAGCAAGTT	
    258907	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  99.0	    30	GTTGCGGCTGGACCTCGAATTCTGAACTGCTACGCT	                              	       

# Left flank :   GTCCTCATTTTCACGCTTTTCCATGATGTCACTTCCCGAAGATAGTGCGGATGCTCGCCTGTGAGCGCGCGGTGAGCCTCGGGTCTGTATGTCCAGAGGCGGCACGGATTTCACGCAACCACGCCTGTTCGTTCGCCGTCACGGGGTCGCCGAACACCTCGATGAGCGTGGCCGCCGCCGTGCCGCCGATCGCCTGTTCGAGCGCGAGACGCATGAGGTAGGCCGCATCGCATTCGAGAGCCCCAGCGAGCGCCGGGATGCGATCAAGTGCGACCTTTGAGCGGCCCTGCTTGATCATCGTGATCATGTTCTGGTTCACGTATCCAGCCTGTGCCGCGATGTCGGCCTGCGTCTTCTTGGATTTCAGTTCGAGAACCCGGCGCTCGACAAATTTTGCAAGTTGGGTGTGCTCGTGCGGTTTCGTGGTCATGTTCTTCCTCGCTGATATCGCGCAGCGTGTGCTGCATGTCTTCTTTATAGCGAGGGGTCGTTGGGGAACT
# Right flank :  TTGATACCCTCTCAAGATCCTGTAATCGCAGGGTTTTGGGAGGGTGCTAAGATACATTTTCCTTACCCTTCGGTCAAAACAACACCAACTGCTCAGGATTTTTGCGGGCACGTCTTCGACCCTGATCCGAAAAGTGAACTATGTCACGATACTGGCGGTCCGTGAAATTCAGGATTTGGACATCGCCATTATCGGGTAAGTTTCTTGCTATACGACTGACGCGTGTCTGGAACGCTTCCTTCCCATTTACGAACCGCGCGTAGACAGAGAACTGGCTTCGCTCGAACCCCTAGTCCAAGAGAAAATTTCGGAACCCCGTTGCTGCTTTTCGCTGCGGTTTTGTGTCCGTGGGGAGATCAAACATTACCAGTATCCACATGATCCTATACCCCGATAAATGAGTTTGTGTTTCGGTCACAATCCCGCGCTCCTTAAAGTGAGCGCATCCGGCGGCGCGGGTAACAACAAAGACAGCTTGCCCGCTTCAAAACTCTGGCCAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCGGCTGGACCTCGAATTCTGAACTGCTACGCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.80,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,1.05   Confidence: MEDIUM] 

# Array family : II-C [Matched known repeat from this family],   
//