Array 1 21416-22878 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968625.1 Akkermansia sp. KLE1797 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 21416 31 100.0 32 ............................... GGCGGTCTGCATGTGGCCTCGGCACAGGTAGC 21479 31 100.0 33 ............................... TTTAGCCTCAGGTTTAACGCCGTCAAAAATATC 21543 31 100.0 34 ............................... GGTCCCTTACCTCCCGTCAACAAGGTCAATATAC 21608 31 100.0 34 ............................... CTCCGCCGTCTCCCGAAGACGGCTATCTGTGCCT 21673 31 100.0 34 ............................... TCAGGCAGCAGGCAGGCAAATACGATATCCGGAC 21738 31 100.0 35 ............................... CCAGGACTTGAACGCCACCGTCAAGGCCGCCAACG 21804 31 100.0 33 ............................... GGTATGGACCTGACGAATGGGGACATCACTACG 21868 31 100.0 34 ............................... CTATGCTTCCTACATCAACGGACAGACTGTCTGG 21933 31 100.0 33 ............................... TATGGTTTAGGCCCCTTTCCCCAGCCACCGGGA 21997 31 100.0 35 ............................... GTTTCCAGTTACATCCCCTACGTTCCCTCCGGAGT 22063 31 100.0 35 ............................... AAAAGCGTTGTCAGTGTCGATGGAATGGCTAATGT 22129 31 100.0 35 ............................... CCAGCTTATCAAGGGGGCGCGGAAGGTGATGAACA 22195 31 100.0 37 ............................... CCGTTCACGGTGACGGTTTTTTTCTTGGGGAAAATCA 22263 31 100.0 33 ............................... ACTACATGCAGGTTTATTTTGTCCTGAATGGCA 22327 31 100.0 33 ............................... TCTGTACTTTCGTTACTCATAATCTTTGCATGG 22391 31 100.0 34 ............................... GGGCCTCAATCAATTCCCGTATCTGAGCATGCGT 22456 31 100.0 34 ............................... ATCCGTCCCTTGACGATGATGACGGGCCGGAAGA 22521 31 100.0 34 ............................... TCCCTCGCCGCCGCCGGGCGCCGCCGGCGCGCCG 22586 31 100.0 34 ............................... TGTCCGGGAAATGGTGAAAAACACCCCGCGCGAA 22651 31 100.0 35 ............................... AGGAGAGCATTGTTGATAAGTTGCTGCAACTGCTC 22717 31 100.0 34 ............................... AACCAGGCGGTGGAAAAAGAATTGATCATCTCCA 22782 31 100.0 35 ............................... ATCTTAATGAGTTCCATCTTTTTATTGCTTTCTAA 22848 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GTTCCGCAGCGTTTTTTGTTCGGGAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCACCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGGAAATTCCCGGGAAGTCGGCGATTTTCATAACCTGTTGGGGATATTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCACCCCTGCCGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC # Right flank : CCCGCCTGGTCCACGATTACTACGGACGAAGCTGGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGCACCCTCACGGGTGCGTGGATTGAAACCCCGCCAGAGACCGGAGCGCTCCCCATCAATGCCGTCGCACCCTCACGGGTGCGTGGATTGAAACTATTCCGGGCAGTGCCTTACGTCGGAAAGCCTGGTCGCACCCTCACGGGTGCGTGGATTGAAACCTTCGGCGATCATTCTTCCGACTCCGATGCAGCGTCGCACCCTCACGGGTGCGTGGATTGAAACCCGGTGGGGGCCTTGCCGGGCCTGGAAGAGGCCGTCGCACCCTCACGGGTGCGTGGATTGAAACGTGCGTACTCTCCACGACGATCCTCCCGCTTGTCGTCGCACCCTCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 23108-23459 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968625.1 Akkermansia sp. KLE1797 Scaffold269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 23108 31 100.0 33 ............................... TATTCCGGGCAGTGCCTTACGTCGGAAAGCCTG 23172 31 100.0 33 ............................... CTTCGGCGATCATTCTTCCGACTCCGATGCAGC 23236 31 100.0 33 ............................... CCGGTGGGGGCCTTGCCGGGCCTGGAAGAGGCC 23300 31 100.0 34 ............................... GTGCGTACTCTCCACGACGATCCTCCCGCTTGTC 23365 31 100.0 33 ............................... GCGTTTTACGAGGCCCCACAGATACAGTCTCCT 23429 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 6 31 100.0 33 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATTGAAACTGTCCGGGAAATGGTGAAAAACACCCCGCGCGAAGTCGCACCCTCACGGGTGCGTGGATTGAAACAGGAGAGCATTGTTGATAAGTTGCTGCAACTGCTCGTCGCACCCTCACGGGTGCGTGGATTGAAACAACCAGGCGGTGGAAAAAGAATTGATCATCTCCAGTCGCACCCTCACGGGTGCGTGGATTGAAACATCTTAATGAGTTCCATCTTTTTATTGCTTTCTAAGTCGCACCCTCACGGGTGCGTGGATTGAAACCCGCCTGGTCCACGATTACTACGGACGAAGCTGGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGCACCCTCACGGGTGCGTGGATTGAAACCCCGCCAGAGACCGGAGCGCTCCCCATCAATGCC # Right flank : CGACGGCTGGACCATGGGAAGAAATGGAAAACTCGTCGCACCCTCACGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTGGATTGAAACCGCTATACCGGAAATTGAAGCAGACCTTAAGGAGTCGCATCCTCACGGGTGCGTGGATTGAAACGTGGCTCAAATACTCCTTCAGCGCGGTCTTTTCCGGTCGCACCCTCACGGGTGCGTGGATTGAAACCACCGCGTCCACATGGGCCCAGCGGGTAGCCTGTCGTCGCACCCTCACGGGTGCGTGGTCATACGGATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGTAGAATGAATAAGCAACAGTTATGCTTCAACATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11838-12259 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968638.1 Akkermansia sp. KLE1797 Scaffold572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 11838 31 100.0 33 ............................... CCCAGACCGGGCCGACGCCCTTGTGATGGCCTG 11902 31 100.0 35 ............................... TCCCAGCCCGCTCCTACTCCCAAGCCGGGAGAAAA 11968 31 100.0 35 ............................... CAAACCACAGCCACGCATCCGGAGTCAGGGGGTCG 12034 31 100.0 33 ............................... AGGCCGCAACTTACGCGCCGCGGCCTGAATGGA 12098 31 100.0 35 ............................... CGCTCCCCATGAAGGGGTCGAGAATTCGTGATTTT 12164 31 100.0 34 ............................... ACCGCGGGGAAGGGAACCCCCTCCCGCTCCTCAT 12229 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ATGGAATCATGGAAGGGGGCCTTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGGACGGAATACTATGGCCTCTGCATCGCAGCAGGTGCGGGTTGTCGGAACGGCTGGAACGACTCCGTGGTGGAACCTTCTTCCGTCCTTCTCACTCCCCGCGCCAACCCCTAGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCATGGAATATGCATCTCCGCGGACAGGTTGGCGCAAAATACCTTTTGCGTGCCTGACTCTCAATATGTATATCTCCCCGCCGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCC # Right flank : CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACAACCGCACCCCGCGGGAGTCGATAATCACCTGAGGGACGACAGGATAGTTGATCAGTGTTGAATTAAGGTTGAAATCCGTTGGAAGCTTGAAAACAAAAGAGGTTGCAAGCGATGCCGAGCACAAGTAGGTATCTGATCAAAACGGAGGGCAAAACACGGGTCAATGACAAGTATCTGATCAAAACGAATCACCCAGGAAAGATCTATGCAGATGGTGTGCAGACGCCCTGCACAGATATGGGTCCACGCTGCAAGAAATCGAAATCGCCAAGGATTACCCGACGAAAAATTAAAAATGTCCGGATAGACTGGACTGTGAGGTTAATCAGAGCGATGTGTCGGTCATGGACGACAACATCACATCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 178474-177969 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968634.1 Akkermansia sp. KLE1797 Scaffold416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 178473 33 93.9 34 NN............................... TGGACCCGCCCAACCATTGCCACACCGCCATTTC 178406 33 100.0 35 ................................. AATCCCCAGTGCTACATCGGGGTCGACACGGGCGA 178338 33 100.0 34 ................................. TGTCCGGACAGTCATCATCAACAACGATCCTTGG 178271 33 100.0 34 ................................. TGGCGACCAGCAGCGAGGCGGTTTTCACCGGAGA 178204 33 100.0 34 ................................. CGCTCCGTGTCGGGCATGGCGAGGTAATCGTCCA 178137 33 100.0 34 ................................. CTGAAGCCTTAACGGTCCTTCAATTATGATTGCA 178070 33 100.0 33 ................................. TCGCCCATGATGTCCTGGCGCACGACCACCCTG 178004 32 87.9 0 .....................-.......T.CG | C,TC,C [177974,177977,177980] ========== ====== ====== ====== ================================= =================================== ================== 8 33 97.7 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : AAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGCGCTGTTTGACATGGTCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGTAGATTGACATTCAAACATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCGAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACGATCCTCCCTGTTCCGCTTCTTCTCTCAATTCCCGCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACGCCGAGAAGTCATTACCGAATACAAGCCGACGCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATAATTAAAAAGCACCCCGGATCAGGTAAGTCCGGGGTGCTTTTTTGTTTTCTACCGCAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGCTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCCGTATCCCGGAACACGCGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCTACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 178738-178570 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968634.1 Akkermansia sp. KLE1797 Scaffold416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 178737 33 100.0 36 ................................. GATCCTCCCTGTTCCGCTTCTTCTCTCAATTCCCGC 178668 33 100.0 33 ................................. GCCGAGAAGTCATTACCGAATACAAGCCGACGC 178602 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 98.0 35 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTTTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCTGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGCGCTGTTTGACATGGTCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGTAGATTGACATTCAAACATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCGAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGGACCCGCCCAACCATTGCCACACCGCCATTTCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACAATCCCCAGTGCTACATCGGGGTCGACACGGGCGAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGTCCGGACAGTCATCATCAACAACGATCCTTGGGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGGCGACCAGCAGCGAGGCGGTTTTCACCGGAGAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACCGCTCCGTGTCGGGCATGGCGAGGTAATCGTCCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACCTGAAGCCTTAACGGTCCTTCAATTATGATTGCAG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 188190-187253 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968634.1 Akkermansia sp. KLE1797 Scaffold416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 188189 31 96.8 34 N.............................. CGCTGACGGCTCCGGCCGCCGCGGTCGTCCGCGC 188124 31 100.0 34 ............................... CAGACGCCGCCCTCAAGCACGAAGGCGTCGAAAA 188059 31 100.0 34 ............................... ATTTCAAACGGCTTCTTTTTTTCAGTATTAGACA 187994 31 100.0 34 ............................... AGACACCGCTGCAAAAAGCAGAGGAAATCGCTAC 187929 31 100.0 33 ............................... AGCCAGCTTAAAGACGTTGCGAATGACGCGCTG 187865 31 100.0 33 ............................... TTTGTGAGCACCGACGATCTGTCTGCTTACATG 187801 31 100.0 33 ............................... CCGTCCCTGGCCGGGGCGCGCTGGATTATCCTT 187737 31 100.0 33 ............................... ATCCGCAAAGCCTTCAAGCGTGGCGGAAGAAGA 187673 31 100.0 33 ............................... TGACGACCAGAATCGTCATTGAAAGCAACCCCA 187609 31 100.0 34 ............................... CGCCCGTCTTTGTTGTTATCCTGTCCCCACTGGA 187544 31 100.0 35 ............................... CACCACTTCCGGGCATCGTCCGGCCCCGGTCGGCA 187478 31 100.0 33 ............................... CTTCTGCAATTTTGCCCTCCGGGCTTCCAATTC 187414 31 100.0 34 ............................... CAACATGGCCAGATGTCCAGGATGTCCTCGTCCT 187349 31 96.8 34 ..............................T TCAAAAAAGGCTTCCAGGATCAAAAAGCTGGACA 187284 31 71.0 0 .C....T...........TA.T...AT..CA | A [187266] ========== ====== ====== ====== =============================== =================================== ================== 15 31 97.6 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCTCACGGGTGCGTGGATTGAAACACTACCCCCAATCAATAACAACCATAATCATATGGTCGCACCCTCACGGGTGCGTGGATTGAAACTTTTGCCGCTGATGGGGTGCGTGATGGCCGGCGTGTCGCACCCTCACGGGTGCGTGGATTGAAACCTTGAAGCTTCCGGAACAATTCAGTCACATGGCCGTCGCACCCTCACGGGTGCGTGGATTGAAACTACGACCAGTACGCTTCAGGCATTGACATTGATAGTCGCACCCTCACGGGTGCGTGGATTGAAACATGTCTAGTGGGCGGCTTGGATGATGGTTTGAATGTCGCACCCTCACGGGTGCGTGGATTGAAACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGACAGAAAGAATCTGAAATGCTATTAAAACAATGAGTCCCCTCAATAAAATTTTCTAAAAACGGAGGTATTTAATAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTGCCATATTATAGTATGAAGAAATAAATATAACCCCCATTTTATCTACAAGGGCCAGTTTACAGGGAAAGGTTAAGTCCAAATTATAGGTGAAATTTAAAGGCCGGCCTATTTTCAATGAAAATAGGCCGGGCAGGAGAGATTAAAATCCGTCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTGCCATCATTGTTGACAATGAGGCTTCTATGGACTTTTGCAGAAGAATATTGACCTGCTGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCTCCTTCAAACATAAAGGGAAGGGTATTTTTTAATAATTCTGCATCTTCATCACTAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 188583-188292 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968634.1 Akkermansia sp. KLE1797 Scaffold416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 188582 31 100.0 34 ............................... TTTTGCCGCTGATGGGGTGCGTGATGGCCGGCGT 188517 31 100.0 34 ............................... CTTGAAGCTTCCGGAACAATTCAGTCACATGGCC 188452 31 100.0 34 ............................... TACGACCAGTACGCTTCAGGCATTGACATTGATA 188387 31 100.0 34 ............................... ATGTCTAGTGGGCGGCTTGGATGATGGTTTGAAT 188322 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 5 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : AACTTGTAATGAAAAGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAGTGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCTCCGGAAGTTCGGTGATTGATGTAAGTCATTGGAAAACGAAGTTTGACATATCCGATTACAAAATTTAAGGCGTGCGGAATATCGTGATGGAGGGAGGTTGGCGCAAAAAGTCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCCCACGCCGTCGCACCCTCACGGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCTCACGGGTGCGTGGATTGAAACACTACCCCCAATCAATAACAACCATAATCATATG # Right flank : CGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACCGCTGACGGCTCCGGCCGCCGCGGTCGTCCGCGCGTCGCACCCTCACGGGTGCGTGGATTGAAACCAGACGCCGCCCTCAAGCACGAAGGCGTCGAAAAGTCGCACCCTCACGGGTGCGTGGATTGAAACATTTCAAACGGCTTCTTTTTTTCAGTATTAGACAGTCGCACCCTCACGGGTGCGTGGATTGAAACAGACACCGCTGCAAAAAGCAGAGGAAATCGCTACGTCGCACCCTCACGGGTGCGTGGATTGAAACAGCCAGCTTAAAGACGTTGCGAATGACGCGCTGGTCGCACCCTCACGGGTGCGTGGATTGAAACTTTGTGAGCACCGACGATCTGTCTGCTTACATGGTCGCACCCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 60401-61841 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968639.1 Akkermansia sp. KLE1797 Scaffold605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 60401 33 100.0 34 ................................. GGTGGTCTCTGCGGTCTGCAGTAAAGTAGCGGAA 60468 33 100.0 34 ................................. ATGTTTGGTTCAGGCGGTTTTGCGGTCGGTGACG 60535 33 100.0 34 ................................. CGCCCCTGTCGTCAACGGGTCCGGCGTCATGGTC 60602 33 100.0 34 ................................. GGTGGTCTCTGCGGTCTGCAGTAAAGTAGCGGAA 60669 33 100.0 33 ................................. ATCGCCCATGAAGACGGCGCGCTTGAAATTGGC 60735 33 100.0 35 ................................. CGCCTCTGCTTCATCACGGTCCACGTCCTCAACTC 60803 33 97.0 34 ...............................C. CCCCCATTTTTGAGCGGCCTGATGGGCTGTCAAC 60870 33 100.0 35 ................................. TCCTGTTCCCCTTGTTCGATGGTGATCGGCAAGTC 60938 33 100.0 33 ................................. TATTTGTGATTCACTCATTGGCGGCTTCTTGCA 61004 33 100.0 34 ................................. CAGACAGGTGACATCCACCTGCATGGACCAGATG 61071 33 100.0 33 ................................. TATTTGTGATTCACTCATTGGCGGCTTCTTGCA 61137 33 100.0 34 ................................. CAGACAGGTGACATCCACCTGCATGGACCAGATG 61204 33 100.0 34 ................................. AGCGCGCCGTGGCTGGTCGCCGAAGAAGGCAGGG 61271 33 100.0 34 ................................. CATCATGGCCGATGCGGTGGACGGATCCCCTTAC 61338 33 100.0 34 ................................. CAGGGTTTCCAGTTCCGCCGCCACCTGGGAGGCG 61405 33 100.0 34 ................................. CAGACAGGTGACATCCACCTGCATGGACCAGATG 61472 33 100.0 33 ................................. TATTTGTGATTCACTCATTGGCGGCTTCTTGCA 61538 33 100.0 36 ................................. CATGATGCACGGGTCCAGGTCCGGGAGCTTCATGCA 61607 33 100.0 34 ................................. CTGGGGCATCACGGGGACCTGGGCCACGCGCGGG 61674 33 100.0 35 ................................. CATTTGCCCTGTTGAATGTAAATATCGCCGTCCGA 61742 33 100.0 34 ................................. CGTGCGGCCCTGTACATGGGCGACAAGCCAATGA 61809 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.9 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCTCACACGAGGTGCGTGGATTGAAACTTCCAACATGAGGGAACGCATGTTGGCGACGAATGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGCCCCTGTCGTCAACGGGTCCGGCGTCATGGTCGTCGCACCTCACACGAGGTGCGTGGATTGAAACGGGGTTCACATGATGGTCGGAGTCTGGATACTCTGTCGCACCTCACACGAGGTGCGTGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCTCACACGAGGTGCGTGGATTGAAACCCTATGTTGTCGGAAGCGACGGACATCATTGCCC # Right flank : CCGCATTGCCTTGTAAAGCATGCCTCCCGGCCTCCGTCGCACCTCACACGAGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCTCACACGAGGTGCGTGGATTGAAACATCAGGTTTCTGGCTTCATAGATTTTCTGTTTCAGGTCGCACCTCACACGAGGTGCGTGGATTGAAACTGAAGAAACTTGCCTGCATTATGAGGAAGAATATGTCGCACCTCACACGAGGTGCGTGGATTGAAACACTGATGGGCGTCCAGGCGGAGTCCCCGTCCGGGAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 62006-62173 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968639.1 Akkermansia sp. KLE1797 Scaffold605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 62006 33 93.9 35 NN............................... ATCAGGTTTCTGGCTTCATAGATTTTCTGTTTCAG 62074 33 100.0 34 ................................. TGAAGAAACTTGCCTGCATTATGAGGAAGAATAT 62141 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 98.0 35 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : ATTTGTGATTCACTCATTGGCGGCTTCTTGCAGTCGCACCTCACACGAGGTGCGTGGATTGAAACCATGATGCACGGGTCCAGGTCCGGGAGCTTCATGCAGTCGCACCTCACACGAGGTGCGTGGATTGAAACCTGGGGCATCACGGGGACCTGGGCCACGCGCGGGGTCGCACCTCACACGAGGTGCGTGGATTGAAACCATTTGCCCTGTTGAATGTAAATATCGCCGTCCGAGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGTGCGGCCCTGTACATGGGCGACAAGCCAATGAGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGCATTGCCTTGTAAAGCATGCCTCCCGGCCTCCGTCGCACCTCACACGAGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACTGATGGGCGTCCAGGCGGAGTCCCCGTCCGGGAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCTCACACGAGGTGCGTGGATTGAAACCACGTGGAACATTTATTCAGATATGCCGGAAAATGTCGCACCTCACACGAGGTGCGTGGATTGAAACCGGCAAATCTTTGAGAGGTATCTGCTCGTCATGGGTTGCACCTCACACGAGGTGCGTGGATTGAAACGTCATGACTGCCGTGTACCAGGATGCGGCGGGACGTCGCACCTCACACGAGGTGCGACTAAACCATTCGGGGAGGCGTTGGAATATCCATCAGAGCGGAGAGCAGAAAGAAGAAAACCGTATTTCCCTGACGTGATTATGTTCGCGATGGTTTCTGCACAAAGATTCC # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 62338-62504 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968639.1 Akkermansia sp. KLE1797 Scaffold605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 62338 33 97.0 34 N................................ CACGTGGAACATTTATTCAGATATGCCGGAAAAT 62405 33 100.0 34 ................................. CGGCAAATCTTTGAGAGGTATCTGCTCGTCATGG 62472 33 97.0 0 ..T.............................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : AAACCGCATTGCCTTGTAAAGCATGCCTCCCGGCCTCCGTCGCACCTCACACGAGGTGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCTCACACGAGGTGCGTGGATTGAAACATCAGGTTTCTGGCTTCATAGATTTTCTGTTTCAGGTCGCACCTCACACGAGGTGCGTGGATTGAAACTGAAGAAACTTGCCTGCATTATGAGGAAGAATATGTCGCACCTCACACGAGGTGCGTGGATTGAAACACTGATGGGCGTCCAGGCGGAGTCCCCGTCCGGGAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTCATGACTGCCGTGTACCAGGATGCGGCGGGACGTCGCACCTCACACGAGGTGCGACTAAACCATTCGGGGAGGCGTTGGAATATCCATCAGAGCGGAGAGCAGAAAGAAGAAAACCGTATTTCCCTGACGTGATTATGTTCGCGATGGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGCCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCGCCGCTTCCATGAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTTCGCATCCGCGCTTCCACCCACGGGATATTTTCCCTTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATTCGGGCGGCCCACGCATTTTTGCGCTCCACAACCCGTACCCTG # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //