Array 1 749-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEQ01000112.1 Streptococcus ruminantium strain MO505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 748 36 88.9 30 NNNN................................ CGCGCATTTAAAGTCTTGTTGGATGACTTT 682 36 100.0 30 .................................... CAGAAAACACAATTGTAGGCTTTTTGTTAG 616 36 100.0 33 .................................... CAACGTGCCCGTTTTCTATAAGCTTTCNNNNNN 547 36 88.9 32 NNNN................................ ACAAGGCTGTGTCTGATGCTAAAGAAGCTGGT 479 36 97.2 30 T................................... TATAGAAAACCCTTTGTATGTGGAATTGCA 413 36 100.0 84 .................................... AGCGTGCTAAAGCTATGGCTAGTGAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 293 36 91.7 32 NNN................................. GTGATGGTTTAGTTGCATTAAGTGCCATTGGT 225 36 94.4 28 T...G............................... TAAAGCAATAGCAAAGCAATTGAAAGGA 161 36 100.0 30 .................................... ACTATACAAACCGTTTGACCTTGAAAACAT 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 10 36 96.1 37 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAACAACTAAAGCTAACTACGAACGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAACAACAAGACTATGAAACATAATTGACTANNNNNN # Right flank : CTTTATATGGTTTTTCAGGGAACTTCAAGCAGTTTTTGTACTCTCAAGATTTAAGTAACA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NNNTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1858-1356 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEQ01000112.1 Streptococcus ruminantium strain MO505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1857 36 100.0 32 .................................... CACATTTGACAAATTTTGTCAAATGTTTTAGT 1789 36 97.2 30 T................................... TACAATATTGTAATACTGTTTGTGATGGCT 1723 36 100.0 29 .................................... AAAATCAGTTTTAGAGCTCAAATCACCGT 1658 36 100.0 33 .................................... CAAAAGCGTGTTATCCATGAAGAATATANNNNN 1589 36 86.1 30 NNNNN............................... CAGCTGCATTAGCAAAAGTTACTGANNNNN 1523 36 86.1 30 NNNNN............................... CTGGTGTTTTGAACGGTAAAATGAAGGCTA 1457 36 100.0 30 .................................... CTGAAGCTTGGCTGGAGGTTAATTCTGAAG 1391 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 8 36 96.2 31 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : ATTGAGATACAGAAACCCTGTTTCGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACTTTTGATACATTATGCGTAGCCAAAGAACAGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACGAGGGAGACGAAGATATCGAGGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCTCAAGATTTAAGTAACAGTAAAACTTGAAAGAACATCAGAGCTAAATGTGTTTG # Right flank : CCGTTCTAAATCGTCCAATTTGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAACAACTAAAGCTAACTACGAACGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 3335-2232 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEQ01000112.1 Streptococcus ruminantium strain MO505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 3334 36 100.0 31 .................................... CATGAGGGGAGGTGGCAGTGATTGGTNNNNN 3267 36 86.1 33 NNNNN............................... GAAGAGCAATACCACCGAAAACACTTGNNNNNN 3198 36 88.9 34 NNNN................................ GATTGATTTGGTCTTTCACTCCTTGCGTNNNNNN 3128 36 88.9 30 NNNN................................ AGATATTTGCAGATTGGGACTTATTACGGA 3062 36 100.0 30 .................................... CAACCTGATCAGCTTTATCTGCTTGCNNNN 2996 36 83.3 30 NNNNNN.............................. TTTGCTCATATTTTTCCTTTCTTAAATTTG 2930 36 100.0 29 .................................... TTTTAAAAAGGTAAATCAACGTCATCTGT 2865 36 100.0 30 .................................... AATTGCTGAAACAATGTTTTAATGGCTTTG 2799 36 100.0 30 .................................... TGATATTAAGAACGATAGCACGTCTCAGGG 2733 36 100.0 30 .................................... TGAAGTTGGCTCAATCCTACTTCCAAAGTC 2667 36 100.0 30 .................................... CTATTCATTCAAAGCCTTTTCACCGTTTTA 2601 36 100.0 30 .................................... TTGAATATTGAGATACAGAAACCCTGTTTC 2535 36 100.0 34 .................................... TTGGACTTCATTCAACTTATCCTCATCCCNNNNN 2465 36 86.1 30 NNNNN............................... CGAAGAATTCTGTCCAAGCATCATTTACCG 2399 36 100.0 30 .................................... TTGAATATTGAGATACAGAAACCCTGTTTC 2333 36 100.0 30 .................................... TTTTGATACATTATGCGTAGCCAAAGAACA 2267 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 17 36 96.1 31 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AGCCTGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACTTTGTGAAAAAATTCCAGCCGATTATNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAACGAATGCCAATCATATCTGCTACCTCTTTCGGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACCAATCCTCAGGATTGTTATGTGGTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACTCTCAAGATTTAAGTAACAGTAAAACTTTAGAGCTTGATCCATTTCAGTCAGCTGT # Right flank : GAGGGAGACGAAGATATCGAGGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCTCAAGATTTAAGTAACAGTAAAACTTGAAAGAACATCAGAGCTAAATGTGTTTGGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACCACATTTGACAAATTTTGTCAAATGTTTTAGTTTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACTACAATATTGTAATACTGTTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 3896-3661 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEQ01000112.1 Streptococcus ruminantium strain MO505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3895 36 100.0 30 .................................... CGATACTTCCGTTTACCTTGGCATTAGCCT 3829 36 86.1 31 GTTTT............................... TTTGTGAAAAAATTCCAGCCGATTATNNNNN 3762 36 100.0 30 .................................... GAATGCCAATCATATCTGCTACCTCTTTCG 3696 36 86.1 0 GTTTT............................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 93.1 31 NNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : CTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATGTTGATAGGGATTATAATTGGAATAAAGAGAGTATAAAAATCATTTGNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAACCTTTCCTGTCAACTTCGAAATTCTCCGCAAGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACTTTGTCTTTTTCAGGGAGCCTTATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAATCCTCAGGATTGTTATGTGGTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACTCTCAAGATTTAAGTAACAGTAAAACTTTAGAGCTTGATCCATTTCAGTCAGCTGTGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACCATGAGGGGAGGTGGCAGTGATTGGTNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAACGAAGAGCAATACCACCGAAAACACTTGNNNNNNNNNNTTGTACTCTCAAGATTTAAGTAACAGTAAAACGA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNNNNTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //