Array 1 985-2670 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJI01000008.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 985 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 1051 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 1117 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 1183 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 1249 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 1315 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 1381 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 1447 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 1513 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 1579 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 1645 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 1711 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 1777 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1843 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 1909 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1975 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 2041 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 2107 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 2173 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 2239 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 2305 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 2371 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 2437 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 2503 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 2569 36 100.0 30 .................................... CCTGTTGTGGGATGACAACAAAGGATTTGA 2635 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGCGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //