Array 1 163632-160796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLI01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163631 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163570 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163509 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163448 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163387 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163326 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163265 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163204 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 163143 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 163082 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 163021 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162960 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162899 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162838 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162777 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162716 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162655 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162594 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162533 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162472 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162411 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162350 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162289 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162228 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162167 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162106 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162045 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161984 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161923 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161862 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161801 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161740 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161679 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161618 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161557 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161496 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161435 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161374 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161313 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161252 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161191 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161130 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161069 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161008 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160947 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160886 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160825 29 93.1 0 A...........T................ | A [160798] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182243-180139 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLI01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182242 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182181 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182120 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182059 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181998 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181937 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181876 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181815 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181754 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181693 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181632 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181571 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181510 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181449 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181388 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181327 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181266 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181205 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181144 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181083 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181022 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180961 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180899 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180838 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180777 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180716 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180655 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180593 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180532 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180471 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180410 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180349 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180288 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180227 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180166 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //