Array 1 171136-173239 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171136 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171197 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171258 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171319 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171380 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171441 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171502 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171563 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171624 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171685 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171746 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171807 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171868 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171929 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 171990 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172051 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172112 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172173 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172234 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172295 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172356 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172417 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172479 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172540 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172601 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172662 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172723 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172785 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172846 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172907 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172968 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173029 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173090 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173151 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173212 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189747-190385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189747 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189808 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189869 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189930 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189991 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190052 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190113 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190174 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190235 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190296 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190357 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGACTCAGGCGGAGAACTGGCCGCATTAACTGTTGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GGTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 190625-191447 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190625 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190686 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190747 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190808 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 190869 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 190930 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 190991 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191052 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191113 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191174 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191235 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191296 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191357 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191418 29 93.1 0 A...........T................ | A [191444] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCGTTCGCGAGGAATACTGCCAGTACCGAATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGGTGGCCAATGGCAATTAATAACAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGCGTGATGAGGTTCGCGGAGCATGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCCCTTTCTGATTTTTTCCGTAATGTCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //