Array 1 41409-43296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVA01000054.1 Pseudomonas aeruginosa strain AZPAE14834 AZPAE14834_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41409 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 41469 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 41529 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 41589 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 41649 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 41709 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 41769 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 41829 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 41889 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 41949 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 42009 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 42069 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 42129 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 42189 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 42249 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 42309 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 42369 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 42429 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 42489 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 42549 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 42609 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 42669 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 42729 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 42789 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 42849 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 42909 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 42969 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 43029 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 43089 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 43149 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 43209 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 43269 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52569-51821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTVA01000054.1 Pseudomonas aeruginosa strain AZPAE14834 AZPAE14834_contig_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52568 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 52508 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 52448 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 52388 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 52328 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 52268 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 52208 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 52148 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 52088 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 52028 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 51968 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 51908 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 51848 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //