Array 1 5275-5913 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEA02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0019 NODE_4_length_238659_cov_28.697178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5275 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 5336 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 5397 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 5458 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 5520 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 5581 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 5642 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 5703 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 5764 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 5825 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 5886 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22665-25439 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEA02000004.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0019 NODE_4_length_238659_cov_28.697178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22665 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 22726 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 22787 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 22848 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 22909 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 22970 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 23031 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 23092 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 23153 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 23214 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 23275 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 23336 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 23397 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 23458 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 23519 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 23580 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 23641 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 23702 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 23763 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 23824 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 23885 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 23946 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 24007 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 24068 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 24129 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24190 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 24251 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 24312 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 24373 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 24434 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 24495 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24556 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 24617 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 24678 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 24739 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 24800 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 24861 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 24922 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 24983 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 25044 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 25105 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 25166 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 25227 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 25288 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 25349 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 25410 29 96.6 0 ............T................ | A [25437] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //