Array 1 11546-9882 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHEK01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N43480 N43480_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 11545 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 11484 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 11423 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 11362 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 11295 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 11234 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 11173 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 11112 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 11051 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 10990 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 10929 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 10868 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 10807 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 10746 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 10685 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 10624 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 10563 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10502 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10441 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10338 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10277 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10216 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10155 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10094 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10033 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9972 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9911 29 96.6 0 A............................ | A [9884] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28807-27803 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHEK01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N43480 N43480_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28806 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 28745 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 28684 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 28623 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 28562 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 28501 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 28440 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 28379 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 28318 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 28257 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 28196 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 28135 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 28074 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 28013 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 27952 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 27891 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 27830 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //