Array 1 846109-848676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 846109 36 100.0 38 .................................... CCTTTTAATACTTTTGTAAACGCCTTCTTCTCCTCCTT 846183 36 100.0 43 .................................... AGGGGGTCTTCCGCAAGGTGTCCACCGGGTTGGAAAAGGTAGT 846262 36 100.0 32 .................................... AACCCGGGCTCTGGTTGCTGCATCCCGGTTAC Deletion [846330] 846330 36 100.0 41 .................................... AGGTATGCCATTGTACTCAAGGAGCACTTTGGTTTTACCAG 846407 36 100.0 48 .................................... CCAAGCAGAGATTGAGGAAGTGAAGGGGGCTCTTGCCCCCTTTCAAAC 846491 36 100.0 42 .................................... CTTCGGTCCTGTGCCGCATGGAACTGGAGTTCCAGCCATTGA 846569 36 100.0 34 .................................... AGTAAGCCTCTTCAAGGGGCTACAGCTCCATATA 846639 36 100.0 36 .................................... TTACTATTGTGGCTAATGCCACCTCACTGGCATTAA 846711 36 100.0 42 .................................... ACTTGGGGCTGGTTCCACTCCGGGCCCCGGCTCATCAGCCAA 846789 36 100.0 38 .................................... AATATTTCCCAGGGCTTCCTTCTGGGACTTGATCCATT 846863 36 100.0 37 .................................... AAGAACTGACCTAAGAAATTCTCTTGCTTTACCTTGT 846936 36 100.0 46 .................................... TTTCTTACACCCACTGTCAGTATCCCTCACAGCGGGGGATGTTGAT 847018 36 100.0 40 .................................... ACACATAAGTGCCGGGGTAGAGGCATGGCTATCCCAGGTC 847094 36 100.0 44 .................................... GAGCTTCTAAAGCCTGGATTATAGGATGAGAGGGGGTTTCTAAT 847174 36 100.0 42 .................................... ATCAATGTGGGCACTGTTTTTCTTCACACTCTCCATGAGAAT 847252 36 100.0 42 .................................... GGTTGATGAAGAGAACTCTCACCTCTTCTGGGAAGGCATCCA 847330 36 100.0 48 .................................... GTCCCCATCGAGGTATTGTTATTGCCTTATGGAAGCCCGCCCGGGGAA 847414 36 100.0 41 .................................... GAGTCCCAGCCGTTCTGGTGACTATCAGCCTTCTTGCTGAT 847491 36 100.0 54 .................................... AGTACTGGTCCTCAAAGTTCTTGAGGAACCAGAGGCGAAAAGCCTCTACCATAA 847581 36 100.0 34 .................................... GCTTTGTTTTCATAGACTCTGTCATCAATTGATG 847651 36 100.0 40 .................................... CATTAACACTTAAAGTGCCAGACACTAGTGTTAATGGGTA 847727 36 100.0 42 .................................... TTCCTCTCACAGAGGAGAGGAAGTAAAAATAACCTTTTAACC 847805 36 100.0 39 .................................... AACCTTCCCTGAAACGTGGAGCTTAGGGCCTTGTCCCAG 847880 36 100.0 42 .................................... AACTACAGGATACTCAGGGTCGGAAGAATATTCTACTAATAC 847958 36 100.0 44 .................................... GTTATTCACTGCCTCCTTCAGGGAGACCACTTTAACGTCCTGGG 848038 36 100.0 43 .................................... ATAACCCTTGCCCCGGGGTCGGGGTCTTTTACATCTACTTCTT 848117 36 100.0 38 .................................... TTCAGCAGTCGGTAAACAACCTCTGCGTAAAGGTTTAG 848191 36 100.0 41 .................................... TCCTTGGGCTCCTAAGCTCAAGGAGCTAGGTTATTCCATTT 848268 36 100.0 41 .................................... TTTGTGCCCATCCGACGGGCAGTGAGCATAACACTCTCAGT 848345 36 100.0 38 .................................... GAGAACTCTCACCTCTTCTGGGAAGGTCTCCAGCACCT 848419 36 100.0 34 .................................... CACTTACCAGTCAGGGAGTTCCACACTACCTTGG 848489 36 100.0 39 .................................... GCATTAGCCACCTCACTTGCATTAACCTTGACTGTGAGT 848564 36 100.0 41 .................................... CAATCCAAACCCAAACCCCATTCAAGAAGACTCTTAATAGG 848641 36 80.6 0 ..................AT.C.......CT...CG | ========== ====== ====== ====== ==================================== ====================================================== ================== 34 36 99.4 41 GTCCCCGCTAGTCGGGGACATAACTTGAATGGAAAC # Left flank : CCTGAACGGGCGGGCTCTGGGACGGCTGGTGGGGGATGCGGTGTGGCACCGGGCGCAATTTTATATTAATGGTGGACCCTCACCCTAAATCCCTCTCCCAGAGCGGGAGAGGGACTTTGATGGCACTACTTCCGAAAAGGTCGTGAATGAATAAAGTAACAACAATCAATTTATTTCGATTGATTCTGGTAACGAAAATCAAGTTATGAAATTGAATAAAGTTACAATAATCAAACTGCAGGGGTGCCAAAATCCCCAATTCGGTGCCAGGAGGGGTCCTGCGGCGGCCAGAGGACCCCAGGGAAGGGCGCTTCATCACTCGCGAGGGATAGAAGAAATGGGGGCAAATGACGCAGTTTCGTGGAATCCCTCGATAGGTTGCCCAGTAAGGGTTTCAGGGATTTTTGAAGAGGGGTTTTGGGTGGTTTGTAGTGAGGAATTTCGGATCCCTCGCAAATCACCTCTTGACACCACGCCCCGTATGGGTTTTAATAAGGAGA # Right flank : GAAAAACTCCGAGCCTTTGGCTCGGAGTTTTTCGTTTGATTTCTGTAACTTGATTCAAAGTCGGTAGAAATCGATTCCCTATTTTTAAGTTTGATATTTGTTATACCATTTTTCGATAAGCCTGACAGTCCCAACTCTCAACCAGCAAGAGCTTGAGGCGGCCATCTCTAACACGATTTTAGAAAAATGGTATTACAAAATTCAACCCTTGCTAGCTAGGTAAAAATTCAGTTAAGTAAAATAAATAAAAACTTAAACTTATTTGAAGGAAAATATTTTGGTTATTTGTCAAAGGACAAAGGACAAGTGACAAATGACCAATGACAAAATATAGGAATTGCCCAACTAGCGGATTCCATTTGGGATAATAGTTCGGGTTCGGGGTCCGTCCCGTCGGCAAAGCGGTAAGCAGAGGGACCGCCAAAGGCGTATTTGGTGCGTCCGATAATGGCAATTAAATATCCTTGATGATTTAAAACTGGACCGCCGCTCATGCCGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCGCTAGTCGGGGACATAACTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2739127-2737166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2739126 35 100.0 42 ................................... AATTGTTCCTTAGCTTGAACACAAGCTTGACTTTCTGCAGGA 2739049 35 100.0 39 ................................... CACTTCCTGTCTTGCTTTTCAGAAGCAAGAGAAGTTGAA 2738975 35 100.0 37 ................................... CCGGTAACACGGCCGCCCCTCCGTTCCGTAGGGAAAG 2738903 35 100.0 43 ................................... TCTTGGGTCCTTTCGATGGACCCATGATTTTTTATGTCAGCTA 2738825 35 100.0 37 ................................... TTAGGTGCATTACAATCTAAGCCATACCACCTTTCTT 2738753 35 100.0 39 ................................... GTGAGCTCGGCGCCGACCACGTGGTCGGCTAAATTAATT 2738679 35 100.0 38 ................................... AGAGGCACCAGAAGCAGAAAGTTGTAGAAAAAAAAGAA 2738606 35 100.0 39 ................................... AGCATCGGCGGCCTTCTGTTCCGAATGGGAACAGGGCGT 2738532 35 100.0 43 ................................... AAAAGAAAAAAGAAAAAAAGCAAGCAATACTTTTTCATAACAT 2738454 35 100.0 42 ................................... TCTCTCGTCCCCGACCCTGCCCAGAGGCAGAAAGTTGTACAA 2738377 35 100.0 40 ................................... TTTTGCCCAGCGGCAGAAAGTTGTACAGAAAAAAGAAAAA 2738302 35 100.0 38 ................................... CCCAGTAACGCCGAAGAAATACTTAAAACTATCCCTAA 2738229 35 100.0 37 ................................... AGTATACGTCGTTATTTTTAATAACGACATTTTGCAG 2738157 35 100.0 42 ................................... TTTTTTTTCTGCTTTCTGCTCAGCGGCAGAAGCGGCAGAAAG 2738080 35 100.0 37 ................................... CCAAACGGAAACATGACTTCGTTATCTTGTATTACGA 2738008 35 100.0 35 ................................... CCTTGAATAACCACATTTTCCAGCTCTCCTTGAGA 2737938 35 100.0 42 ................................... TCCAACCACTGCCGTTGATGTTGGGCAGAAGCTGGTACAGAA 2737861 35 100.0 36 ................................... ATTTCCAACCACTGCCGTTTTATTTTTTGATGTTGG 2737790 35 100.0 39 ................................... CCAAGGGGGAAATTGGCGTCACCATTTTGTATGGTGACG 2737716 35 100.0 43 ................................... CAATTTATTTCTACCCATTTTTGGTGGGCAGAATGGGCAGAAG 2737638 35 100.0 38 ................................... CCCTCTACTCCGAATGGAAATAAAACCTCGTCATTTTG 2737565 35 100.0 38 ................................... CTGTTCCAAACGGAAAGAGAGCATCGCCATTTTGGATG 2737492 35 100.0 36 ................................... AACATCGTTATCTTTCACATCGATAGCTGCTAACTC 2737421 35 100.0 42 ................................... TCTGAGGATGCCAAGAAGGCACCCTCTTTCCAAACGGTCCCT 2737344 35 100.0 39 ................................... TTTCACTGATTCCATATGCCATTGTCATATGGATATTAG 2737270 35 97.1 35 ....................T.............. GTTCCGCCTATGCCTTGCAGCCAACGTAAGAGCGT 2737200 35 97.1 0 ....................T.............. | ========== ====== ====== ====== =================================== =========================================== ================== 27 35 99.8 39 CTTTAGACTTCACCCGAAGTCGAATTAGTGGAAAC # Left flank : CAAAGGCAGGGGGCAGGGGGCAGGGGAGCAGGGGAGCAGGGGAGCAGAGGGGCAGAGGGGACCTGGAAAAGTTCGTAGGTTGGGTTGAGGAACGAAACCCAACAAAGGCAGGGTAGCCAGGAGGACTGGGGGGACCTGGAAAAGTTCTTAGTAGTTGTAAACTATATTGCTCCCCCGCTCCCCCGCTCCCCCGCTCCCCCGCTCCCCCCCCCCGTCTCCCCGTCTCCCCGTCTCCCCATCCCCCCGTCCCCCGCTCTCAGACTGATATATCAGATAAAACTATCATTCAATAGCGAATGATAAGCATCTGAGGGGGTGAGGCAGTGGCTGAAACCCGCATTCTGTCGTTGACCCCCTCAGATAGCTCTCTATCAGGGGCTTTCAGGCTAAGAATTTCCAGCATTTGACGTGAAAATCCCGCATTTGTCATTACAAAAACTTGACCCCCTCAGATTGAGGGGTGTATAATACAGTCAGGGTAAGGCTCCCAGGAGCCAAGC # Right flank : TCGTTTCAGATATCGCCTGTAGTAGCACAGCGTCATCAAGATATTGGGTAAACGAGAAATACTTATCGGCGCTGAGCTTGTCCGTGCCCCCAATGACATAGAGGGCACGGCATTATTTAGCTCGCTTGTTTTCTGCGAAATATTAAAGTAGCTGTGCTACTACCAACCATCAGAGCCACCCGCCGTAGGGGCGAAGCATTCCCACGAATCACCTCTCGCAACCAACGGCGAATTTATAGCAGTAGCCAGACAGATTAGGACATCGAGTGCCTCTGGAGCCGAAGCCGAGTAAGATTTTGTCCTCACTGCCTTGTGCTACCCAGACAAAAATTATCGCCTGTAGGGGCACGGCGTCATTAATATTTGGCCGTTAACCGAAATATAAATCTGCGCCACGCTTGTCCGTGCCCCTAATGACATAGAGGGCACGGCGTTATGTGGTTCACTTGTTTTCTGCGAAATATTAAAGATGCCGTGCCCCTACAAATCATGGGATGTAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCACCCGAAGTCGAATTAGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 2783913-2781701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2783912 35 100.0 40 ................................... CTCAACACACTTACAAACGACCTTGTAACCTGGGAAACAT 2783837 35 100.0 37 ................................... TTCTCGCCACCGCATGTTTCGGAAAGATCAAACTCAT 2783765 35 100.0 38 ................................... GTGACGAAAAATTATTTGTCGATCAGTTGATCGATTTT 2783692 35 100.0 39 ................................... AACGGAACCTCATTTTGATCTTCACCACAAAAAGCAGCT 2783618 35 100.0 39 ................................... TTGAATAGTTTTTGATATCTCCTAGTCGCCTGTAGCACT 2783544 35 100.0 38 ................................... TTTGATAGCACCGTTCTTCTACTTTACATTCTTTAGTT 2783471 35 100.0 38 ................................... TCTACGGCTTAGTAGCTCCGCAAACTAACGAATACCAC 2783398 35 100.0 36 ................................... TCAAGTCGAAGCCTTGGTCTTCTGCACAGGATATTT 2783327 35 100.0 37 ................................... GTTTCGCACGACAGTGGCAGACAGCTCTACCTCGGTT 2783255 35 100.0 36 ................................... AATGCGACAAAGTCGCCTAACTCTAGGGACTGATTT 2783184 35 100.0 38 ................................... ATTCAGTCGTCCCGTGTTGCTGAACAGATACGAGAATC 2783111 35 100.0 41 ................................... TTTGGGGAGTACTAGTACCCATTGACCGTTAATTTTTTGCC 2783035 35 100.0 37 ................................... TATTAAGCAAAACTTAGTTTTGACTTCTTTCACACCT 2782963 35 100.0 35 ................................... TTACTATCTTTGCGGGGTATTTCCGGCTCCCTAAT 2782893 35 100.0 36 ................................... AGCTGTTGACCGATCCTACTGCGACTTGAGCGGATG 2782822 35 100.0 36 ................................... AATTGCGTTGATTTTCAATGCCTAAGGAATTGAAAT 2782751 35 100.0 36 ................................... CTGCCTCAAGACAGACGTCCGCCCAGCGAATGCACT 2782680 35 100.0 39 ................................... GATAACTCATGTCCTGCTCAAACAACTGGGCAAAATTCT 2782606 35 100.0 35 ................................... GACCTTGTGTCCGACGGGGGAAGTATGCCTCCCCA 2782536 35 100.0 37 ................................... TCAAAAAACACTGCATACTGCTTGGTGGGATCAAGCG 2782464 35 100.0 40 ................................... TGGTAGCCCTTCAGGCCCTACCAGGCAGAGACTTATTATA 2782389 35 100.0 39 ................................... TAGACGATCCGGGCCCAGGAGTCTGGGTTGTTGGATTAA 2782315 35 100.0 34 ................................... ATCTTAACGATAGCACCAGGAAAATTTTCCTCCA 2782246 35 100.0 38 ................................... TAGGAAACAACAGCATTGTTAGTGCTGAAATTCAAAAT 2782173 35 100.0 42 ................................... AAACATACCTGGGATGGAAAAAATTCGCATTTCTGTCTGAGT 2782096 35 100.0 39 ................................... TCTATGCAAAAGCCAAGCTCATCTCTTTTGGTGCAGATG 2782022 35 100.0 37 ................................... TTTCAAACAATTTTCTTCCCATTGGGGGAAGTCCTGT 2781950 35 100.0 40 ................................... TTTTTCCTAGCAAAACAGCATCTGTATCGGTCTCTTTTTT 2781875 35 100.0 33 ................................... TTTTCCTTCTTCCAGGCACTTTCTTTCCCATTG 2781807 35 100.0 37 ................................... TATTTCGGAAACTTCTATGTCGGCTTGTATGCCGACG 2781735 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 31 35 100.0 38 CTTTAGACTTCACCCGAAGTCGAATTAGTGGAAAC # Left flank : TCTCCTCTGCTGTGCTAAGTTCATTAATCTTTTCATTCAGTAATACACCAGGTTTTTACTCATGTAATTATTGATTGATTTCAGCTAGCTGGTAAAAACACCCCTCATATTTTCGCTTGTGCTGCACGATTCGGTAGTGGGTGGTGTGATTCATCCTTTAGGGAATTGCTTGCGTATAATCGCTGTTAATCGTTAAGAGATGATTTTTGCTAGATTGCTGCTAGCAAATATCTGCTCCCCCGCTCTCCCGCACAAGCGCTCCCCCGCTCCCCTGCTCTCCATCTTTATTTTCTCTTTCCAGAGTTTTTTCGAGGGGGTCGGGCAGTGGCTGAAACCCGCATTCTGTCGTTGACCCCCTCGAATTACGCTCTGGGATAAGGCTTCAGGCGACGATTTGCCTCGATTTCCACAAAAATTCTCTGTTTGTCATTACAAAAACTTGACCCCCCCGAATTCACTGGTGTATAATACAGTCATGGTAAGGCTCCCAGGAGCCAAGC # Right flank : TAAAGGGCACAGCATCAAGTCTGTGCCTTGTTTTATATCTGGTAGCAACTAGCTGGCAAAACTCCCTTCATATTTGCCACCTAGAACGCACGGAAACTGCTTGGGTGATATGAATCATCATGCAAGCAGTTTCTTGTGGCTTTATTCACAACTTTTCTAGAACCCTTGTCCCACAAGGATTTCATCGACTGGATTTCAAGACTTCCTCTATCGCCCGCACCCGCCGCCCTTGGTCTAGAGCGATGCACTGCCACCGCCATGCTTCCGAGTATGGTTTCAGTGCTGCTAACTGCTCTCGATAACTGGCATTGTCACCGCAAATGCGGAATAAACCACTGGCGGAAAGGGTGCCTTCCTCCGTGCGGAAGGACTCAACACGAGCGTGAATCAGTGCCTTCTCTCCTTTCAAACCTTTTGCCAAGGCTTGGGCGTACCGGGTGCCAAAGTCCTCTCCAGCACGGGGCGACTGGTTCGCAAGGTCGGCGCCATTGATGATGCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCACCCGAAGTCGAATTAGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 3160648-3164391 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 3160648 37 97.3 35 ....................................G GTAGCCAAGAGCCACGCAGATTCCTGCCCCAATTT 3160720 37 97.3 44 ....................................G CTGGTCCATAGCTATATTCCCATATTATTACATTATAAGTCCAG 3160801 37 97.3 39 ....................................G TTGCTCTTTCTTCTGGCGGACGATAGGAGCCTTCAGCCC 3160877 37 97.3 35 ....................................G TAGAATCACTGCGATCGCTCTTAGCCCTGATGGGC 3160949 37 97.3 34 ....................................G GTATTGGCTCAAGCGAGCTTACGAGGTATTACCA 3161020 37 97.3 38 ....................................T TTAAAAACCTTAACTGCGGCGCTGATCCCCATGGGGGT 3161095 37 100.0 34 ..................................... CGATTTGTATATAAATATCTACAATCCAACAGAG 3161166 37 100.0 36 ..................................... TGCCCTCATCCTCCCATTGCTTAAGGATTTTAGCTT 3161239 37 100.0 37 ..................................... TTGTGGCCATTACATCACCATCCCTTTGGCAGTGCAA 3161313 37 100.0 41 ..................................... ACGGACATCTCAGCGATTTTCAAGCCTAGCAGTGATGCCAC 3161391 37 100.0 35 ..................................... TTGCCACTGCAAAGGCGCGGGAGTTTCTGCCACCT 3161463 37 100.0 38 ..................................... ACCAACATCTTGTCGATGATGTTTGCCGTAGCATAGGT 3161538 37 100.0 38 ..................................... AATTGTGCAAAGGGAAATCCAGAATGTCAGGCGGCAAC 3161613 37 100.0 38 ..................................... TCGGCTTCTTCCCCCATTTCGGCTTTATATGCCGCCAC 3161688 37 100.0 39 ..................................... TGGCGTGTTTAAGGCGGGAGAGAAAGGAGGCAAGCGCCA 3161764 37 100.0 38 ..................................... GGGATTAGCCCCCATCACACACCACAGGGGAATAGGCC 3161839 37 100.0 34 ..................................... TGTTCCTTGATATAGGAAATTGCATCACCCAAGG 3161910 37 100.0 39 ..................................... TTGAAAACTTTAATCGCGGCGCTGATACCCATAGGGGTA 3161986 37 100.0 38 ..................................... GACTAAAAATGCGCTACTGACCCTTCCACTTAATCCGC 3162061 37 100.0 36 ..................................... GAATCCTTCGGCGATTTTTCCTGGCACCTTTTGGAA 3162134 37 100.0 38 ..................................... ATGTTGCCGCCTCCATATCGCCACCGCCGAGACCATCC 3162209 37 100.0 33 ..................................... AGCAAGTAGGTAAGGTATTCCATACTCTATGAA 3162279 37 100.0 42 ..................................... TTCATGGGTTGAAAGGAATCAGACTCTAAAGCGACTGGTGAG 3162358 37 100.0 36 ..................................... GCTGGTTACACCACCCGTACTAGGTTCGGCGACAAA 3162431 37 100.0 37 ..................................... CAGAGTTTCCCCTAGCAATGCCGCCAAATCCTCACCG 3162505 37 100.0 35 ..................................... AATAATCAGCTCTTGTACACAATCAACGCCACTTT 3162577 37 100.0 36 ..................................... GATAAACAGCAATTGCTTGGACACGTACCGCGTGAA 3162650 37 100.0 37 ..................................... TTGGAGCATTTGATTGTCGATACTTTCTATTTTTTCC 3162724 37 100.0 36 ..................................... GGAATTCCCGTGCAGCCTCACCAGTTGCTCTAGAGT 3162797 37 100.0 38 ..................................... GCCTCTGCTGATGGGCTGGATTTAGAGGTAGTTCTTCA 3162872 37 100.0 34 ..................................... GCCTTGGAATGTGATTCTCTTTTTGAGCTAGCCA 3162943 37 100.0 36 ..................................... GCCGTTTGTTCATTCAAGGAATACAATCCATCCATT 3163016 37 100.0 36 ..................................... CTGTAACATTTTGAGGTAATTTTATGAGCTTTGAAG 3163089 37 100.0 37 ..................................... TAGAGGTTTATGGACGCGGTGAAAGTTTTGAGGATAG 3163163 37 100.0 37 ..................................... TCGTGATTCGTTCCGGTGCCGCTGGCGGTGCAGTTGA 3163237 37 100.0 38 ..................................... AATGGAGCCATCGAGTAATCTCAATTATTCGCTTTATC 3163312 37 100.0 39 ..................................... TGCGACGGGTAGAGGGAAAGCACTGCTCACCTAAATTAG 3163388 37 100.0 36 ..................................... AGCTCAATTTTGCCGTTGTAGCTGCGGGCGCTGCGG 3163461 37 100.0 42 ..................................... AAACTCAGAGAGGGAATAGGCAACCTAGAAGGCAGATGGTTA 3163540 37 100.0 37 ..................................... CAAGAGGTAAAAGATGAAAAAACAACTAGCAGCGGCA 3163614 37 100.0 38 ..................................... GATGACCCTGTGCCTGATAAACCAGATTTTCAGCTTGG 3163689 37 100.0 38 ..................................... TTATCTTCTACGATCTTCCCGCCGATGCCGATCGCGAT 3163764 37 100.0 35 ..................................... ACGTTAAAGCCAGATAAATGCGGGAATTACAGACT 3163836 37 100.0 40 ..................................... TCCCAATGGGTCGTGGGGCAAACCCGTTTGTTGGTAACGC 3163913 37 100.0 36 ..................................... GCAAGACGGATATTTTCCCAGCAGTATCGGTGAAAA 3163986 37 91.9 38 TTT.................................. AGATTTCGTAACCAACAAAGCCCCCCCTGGACACGCAA 3164061 37 100.0 35 ..................................... AAATTCTGCAAGCCCCGATTCTGGAAACCTATACC 3164133 37 100.0 37 ..................................... GATTTGTATATTCCCCCTGCCCAATTAATCAAAATTG 3164207 37 100.0 39 ..................................... CTCTAACTTGTTTGAGGGGGAGAAAGCCACCAAAGACGG 3164283 37 100.0 35 ..................................... GTGTTTGGCAGGGACAAGTAGCTGACAGTAGTTAA 3164355 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 51 37 99.5 37 CCCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Left flank : TGCTGTTTCATAAAACTTGGTAATAGGGGAATCTAAATTATAGCATTCAAGCTGCCAGAATTTTTCTGACAAAAATTCCTCTAACCGGTAATTTTTTTCCGAATCAGATGTTATAATAATACCAAATACAATAGATGCACTAAAAATCATCTCCCCTGCTCCTGGTCTCCCCGTCCCCTATCCCCCCTGTCCCCCCCCCCCCCCGTCTCCTGAATTTTTGTCTCCTGATTTTTACCTGCCCCCTGCACCCCTGCGCCGATGGGTAGGTGTTGAAAAACGCTCTCCCAAAATTTCGCCGGGAACCCTTGACGGGCAAGGATTTGAGCCCTGTCCCAGAAAAAAACGATTCGCGCAAATCCCGAAACCCTTATGACACAAGCATTAGAGCGAAATTTTTTTTCAACCCCCTTGACAGCCCAGGAGCTGAAATGGTATTTTAGGATCGATTCGCGCAACTGCACCTTGAAAACCGCATATTCCAAGGGTTCCAGGAGCCCGCA # Right flank : CATGATGGATGGCAAACTTTACAATTCTGAATTTAACCAGTTAATTACTTGTAATTCAGGAATCCGCTGGAAATGAGCTTCATTATTCGTCACTACTGCCCATCCCCGAATTAATGCCGAAGCTGCTATCAAAATATCCGCATCTCCAATTGGCACGCCACGCTGTCTCAAATCAGCATAAATATCTGCTGCTTTGACTACAGTCTCATCAGTGATAGGCAAAATTATATTTTGGGAACAGAAATCATCAAAGGCTTTTATCTGTTTAGTGGCACCTTTTGCCTTGAGACCTCGCAGAATTTCATAGCGAGTGATAATTGAAAATGTTAGCTGCTTGTGGTATAATAAATAATCTTGGGCTTGCCGCAATGCAACTGGATTTTGTCTAAGAATGGCTGATAGGATATCTGTATCCAAAATAGCTCTAGAAATGGACATTAGACAGTTTACTCTCCAAAAAAATTACGACGATCGCGAGCAAGTTCTTCTATCTCTTGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 5 3539794-3537494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3539793 36 100.0 38 .................................... AATGTTCGCCAGGACGGCGAATTTTGTGGCTTCGGCCC 3539719 36 100.0 36 .................................... GCCATATTGAGCAAAGGCAGGGAGAGGGGAGAGAAC 3539647 36 100.0 40 .................................... TATGCGCTGCCAGCGATGCGGTGAGGACTGCGTGTACCCC 3539571 36 100.0 44 .................................... AGAGATAAAGGTTGTTGCGATCGACTCACTGGTAGTTACCACCC 3539491 36 100.0 38 .................................... ATAATTAGGATTGGACATAATTCAACCTCCCTTTATCC 3539417 36 100.0 37 .................................... TTCTCCCGTTTTTTGCTGGTCCTGAGCGGCGAGGGCC 3539344 36 100.0 36 .................................... TGATTGAGTAGTTCCCCATCGCATTATTGCAAGACC 3539272 36 100.0 37 .................................... GGCTATTTTTGGGGCGCATCCCTCCGGCTCAGAATCC 3539199 36 100.0 38 .................................... AATTCAAGACGCCGAAGAAACCGGCGCCAACCTGCTCC 3539125 36 100.0 39 .................................... CCACAGAAGGCAAAAAGGGGGGAGCGTTAAGCGGCTCCC 3539050 36 100.0 35 .................................... CAGTCATTTGTTTTCTCCGGTGTTTTCTCCCGTTT 3538979 36 100.0 38 .................................... AACTTGAGTGGTGGTGGGGGCAGGGGTGGGTGGGTGGG 3538905 36 100.0 34 .................................... TGTACCCAGGATGCAAGGGAATCGGATTGGCAGC 3538835 36 100.0 38 .................................... CTCTCCCTGCGATTGGGGAGATTACTTTAATTTTTGTG 3538761 36 100.0 35 .................................... AAAGAAAATTAGATTAATTTGGCTGATTGCAATGC 3538690 36 100.0 34 .................................... ACATTAGATTTTAAAACCAACTCCCTCTCCGACG 3538620 36 100.0 34 .................................... TGATGGTGGCGTCCCCGATGCCGGCCCCCGTCGC 3538550 36 100.0 37 .................................... ATATCAGCAGCTAGCTATTGAAATTAGAGCCGAAGTT 3538477 36 100.0 38 .................................... AAATTCCTGTAGCATCTCCATTTCAGCGGTGGTGAGCT 3538403 36 100.0 37 .................................... GAAAATCTCGCACCTTAGCGGGTGAAGTTTGCCTGAG 3538330 36 100.0 36 .................................... GAAAATCCAGATGCAGCTCCCCCGTGAGCTAAAATT 3538258 36 100.0 34 .................................... TTTGCAATAATTTATATAGCTGGAGTATAAACTC 3538188 36 100.0 40 .................................... TGATAGGATTTTTTTTAGAAGGTATGAATATATCTGAGAC 3538112 36 100.0 37 .................................... GAGGCAGAAAGCCCGCCAAGTGATGAGGGACAAAACC 3538039 36 100.0 38 .................................... GAAAAGAAATACCGGGATGCCTACACCGACAGGTTCAC 3537965 36 100.0 40 .................................... TTTGCTGAAATTATAATCATTTCTGTGGCTGCTTTGTCTC 3537889 36 100.0 34 .................................... TTAAGCTATTTCCCCAAGGGGAACTGGGCTTTGC 3537819 36 100.0 37 .................................... ACATTGCCATGCTTTCCCATACCGAGCCGCCACCGGC 3537746 36 100.0 38 .................................... TGCTCAATTCTGAAAAGAAATCAGCTTTTTGCTGATTC 3537672 36 100.0 37 .................................... AGCAATGAAACGACTCAATCAACCACTCCATCGACAC 3537599 36 100.0 34 .................................... AAAACGCCCTTTCCGCAGTAGCTCGGCTGGGAGC 3537529 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 32 36 100.0 37 CCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Left flank : AGCGAAACCACCTTATTACAAGAACGCTACCACCATTGGCAGCAAACCAGTCCCCGCTGGCAAATCAACTTAGGAGAACCCCTACCACCCTATCATTTTGTGTAACATCAAATCCAGCTTTTACTGCTATAATATATGATGTGACTGGCGGAGCATAGCTCTGAACTAAACTCCCCCGCTCCCCTGCTCAAGAGCTCCCCTGCTCAAGAGCTCCCCTGCTCAAGAGCTCCCCTGGTCCCCCCGTCCTCCGGCGCGGATGGGTAGGTGTTCAGAAAAGCTCCCGCAAAATTTCGCCGGGAACCATTGACGGGCAAGGATTTGAGCCCTATAACAGAAAAAATCGATTCGCGCAAATCCCGAAACCCTTATGACACAAGCATTAGAGCGAAATTTTTTTTCAACCCCCTTGACAGCCCAGGAGCTGAAATGGTATTTTAGGATCGATTCGCGCAACTGCACCTTGAAAACCGCATATTCCAAGGGGTCCAGGAGCCCGCCCC # Right flank : CCAGACAGGGACCAGCAGAAAGCCCGAATCTCCATACCATATTTAGCAGCCTATTTTCCTAAACTTTAGAAAAATTTAAGAAAAGTTCAAATTTCCTGACACTTCCGGTGGACAAACTGGCTAAATATTAAAAATTACATCAATTCCTTGCCACTAGCAAGGAGGATGTATGAAAATTGGGGAGTAAGGATAGCCAGTAGTGCGAGAGTTTAAAATGCAAGCGATAAATTCTCAAATCGAAGAAGTGATCAGCCGGGGGGAGGGGCGCTACCTCAGCGCCACGGAACTACAGCCCATCAAGCAATACGTACAAACTTTCACGGCGCGAGCGAAAACGTATCAAATATTGCAAGAAAAATCCGAAGTGTTGGTGCGCCATGCTCTGAAGAAGTTTATGGTGCAGCACCCGGACATTATGCAAAAACACGGCAAGCGCTGTCATTATGATATGACGATGTTGCTGCGCTATGTGGGTATTGCCATTCTCCGTAATGACCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 6 3581687-3582691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 3581687 37 100.0 37 ..................................... TAACTGGTAATGGCAACAATCACAGCAACCAAAGTAT 3581761 37 100.0 38 ..................................... GAGTACCGTTGAAAATTCTCATTTCCTTTTCCTTTTTC 3581836 37 100.0 36 ..................................... AGCAGCTTCCCCAGAAAGCTACTATCTTCATTGCGG 3581909 37 100.0 45 ..................................... CTCATCTCCCCCCCACACCAGGGCTATGCTTGCCCCTCCCAGTCC 3581991 37 100.0 38 ..................................... TTTAATTTTGCAATCAGCGGGACGTTAACGCGAACCTG 3582066 37 100.0 37 ..................................... ATCATTGCTGCACAAATGTCAACGCTAATAACTTTTT 3582140 37 100.0 37 ..................................... TAACTATTGCCTTTACCGTAGTCTTCATGTTTGAGAA 3582214 37 100.0 36 ..................................... TCGGCAGTCGCTAGGACTTGGCCGAATCGATCGGCG 3582287 37 100.0 38 ..................................... CAGTCATCGCGATCGCCGAAAGCTGCTTCGACAATGAA 3582362 37 100.0 34 ..................................... CGAAAAACCAGATCAGATATTGTGTCGTTTTCTT 3582433 37 100.0 38 ..................................... GTGGATGTTGGCTCTGCCCAACCCTCCACATAAAAAAG 3582508 37 100.0 40 ..................................... GTGCTGTGGGTGGGGAGTGAGCTTGCCCTGATGTTCTATC 3582585 37 97.3 33 .T................................... GCCCTGCTTTGAAATCTGTAACATCATTCAAAA 3582655 37 83.8 0 ..G.................G.GAA...........T | ========== ====== ====== ====== ===================================== ============================================= ================== 14 37 98.6 38 CCCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Left flank : TATCCGTGGGGGGCACGGCAGTATTAATATCTCGGTTTGAGGCGCTATGTTAACGCGGGTGCAGTATAGTGTATTTGAGTGTCAGCTTACAGATACTCAATATGAGGAACTCAGGTCCCGCTTGAGTAAGTTGATTAAGCCGGAGGACAATATCCGTTTTATTCCCTCTGCGCTTGTTGCTTTGGTAAGGTCGATCGGATTGGCGGACCGTCGCCGGTGGATAGGACCATCTTCTTTGCTTAACCCGATTTTGCGCGGAGGGGTAGGTGTTGGGAGAGGGCAATCAAAATTTTCGCCTGGAACCGTTGACGGGCAAGGTTTTGCACCCTCCCCGATAAAAAAACGAGCCGCGCAAATCCTGAAACCCTGATGAAACAAGCATTGCAGCGAAATTTTTTTTCAACCCCCTTGACAACCCAGGAGCTGAAATGGTATTTTTAGATCGATTAGCGCAAATGCACCTTGAAAACCGCATATTCCAAGGGTTCCAGGAGGCCGCC # Right flank : TATACAATGTATAGCACTAAAAATACTAAAAGCCGAAACCTCTACAGCATAAAGGTTTCGGCTTTTTTTGGTGGAATGCCAGGAGGCGGAATTGAACCGCCGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGAGCTATCCCGGCTTAACTTTCTCATGCTTAATTAGCATAACTCAATAATTCCAGCTTGTCAACCCCTATTTCAAAAAATTTTTTGGGGGGATGCTGAGCCTAGAACTACACGCCCGACACGAGGATTTTCAGTCCTCTGCTCTACCGACTGAGCTATCCCGGCTTCATTTTTCATGCTTAACCGGCATAAAATTTTTTTGGGGACGTGGAACCCTGGTCCCACGCCCCTTTTACCTCTAGATAGGACGCAGGCGGGTGACTTTGAGCTGGAACTCACCCACGCCGCCTTCCCCGAAAGCCCGCACTCGGACGATGTAATCGCCAGCGGTGGTAATACGGGAGAAAAGGAGAGAGTTGGTGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 7 3605603-3610228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3605603 37 100.0 37 ..................................... CTCCGCAAATACAATTACTCATCCCCTGCTCGCTGTA 3605677 37 100.0 36 ..................................... TGGAGGAGGCATACCTCTGGTAATTTCGATCACCCT 3605750 37 100.0 36 ..................................... CTGGATATCCAGGGATTGGGCGGGGATGAAAACCGT 3605823 37 100.0 34 ..................................... CCCCCCGTGCTAATTAGTCTCCGGTGGTGTAGCT 3605894 37 100.0 39 ..................................... CTCAGAGATGAGGAGGAAAAGGCCCAGAAGTTGGGCAAA 3605970 37 100.0 39 ..................................... TCTGAATACCAGACAGTCACATGCTGATATCCCTTGGAC 3606046 37 100.0 35 ..................................... CAAGCTCACATCAAGAAACTGGCTTTCGATTATGA 3606118 37 100.0 37 ..................................... GACTAGCAGGCAAAGCCTTAATCCCATTGCCTTTGGA 3606192 37 100.0 36 ..................................... CATTCCCACCACTGAAGTACCTCCCAGTCGGGGAAA 3606265 37 100.0 35 ..................................... TCATCCCAGGATTCTTTTGGTGGTTCCATTCCATA 3606337 37 100.0 36 ..................................... TAAGAAACAACGTGCCGGGGAGAGGGGAGCGATCGC 3606410 37 100.0 37 ..................................... AAAAAATGTCCCCACGGCGTCGGGGGAGGCAAAGGGG 3606484 37 100.0 36 ..................................... TTTGAGGCTGTCGAGCCTCAACACCACCGCCGTATC 3606557 37 100.0 37 ..................................... CTTTGGGGGCTTCTCTTTCTCCTAGGACTGCGCCGTG 3606631 37 100.0 37 ..................................... ATTGTTGGCCCACTCCCCCCACTCAAACTGTAGTCGG 3606705 37 100.0 38 ..................................... AAGGCTGGCGTGACGGCTAAATTTGGCGGTTTCCGCCA 3606780 37 100.0 38 ..................................... GCGTCCCCGATGCCGGCCCCCATCACGGGCCCCTATTT 3606855 37 100.0 37 ..................................... TTGAGAAGTATCTGATAAATCGCTAAATAATGCGACC 3606929 37 100.0 37 ..................................... ACACGGTTTTTGGTGGTGTCACATAGGGACTACATAC 3607003 37 100.0 37 ..................................... ATGGTATAATCCCGTTAGCAGATAGACTAAAAAGCGG 3607077 37 100.0 36 ..................................... GGGGGGACTTTGTTTTTTGTTACGGGAATCAAACAT 3607150 37 100.0 37 ..................................... TTAAAGACGGTGAGGAATTTTTCATCCGAGCATCAAA 3607224 37 100.0 36 ..................................... GAGCAACAACCCAATCAACCAGATTCGCCATACTTT 3607297 37 100.0 40 ..................................... CTCACTTTGCCCCATCTGCAGCTGGCGACGAGCCGCACCC 3607374 37 100.0 39 ..................................... GCGCTTCATTTCTAGTTCGCGCTTTACCCAATACCACAG 3607450 37 100.0 38 ..................................... TAAATTCCCACGGTGTTTCACCTACAGGCGATCGCCCG 3607525 37 100.0 40 ..................................... ATCACCTTGGGTAGCGATGACCTGCCCCCGCAAAAAGAAG 3607602 37 100.0 34 ..................................... CATTAATTTCGGCGTCGAAATTCCCACGGTGGTT 3607673 37 100.0 38 ..................................... CAGTCAATTGAACTAGCTTTAACAACAGGCGACAACAT 3607748 37 100.0 39 ..................................... AGGATGACGGTGTTGGGGGGGACCCCCTCAGGTATGGGT 3607824 37 100.0 38 ..................................... AAATTTCCCGTCGTGGCCGCGCTTCATTTCTAGTTCGC 3607899 37 100.0 39 ..................................... ACATCATCTAACTTGTTTGAGGGGGAGACAGCAACAAAG 3607975 37 100.0 36 ..................................... TAATAGATAGTGCGGACATATCCGCATATACCCTTC 3608048 37 100.0 39 ..................................... TCGGAAAAAGTCCGAGCCACAGTGCCGGTCGCGGTAGCG 3608124 37 100.0 38 ..................................... TAGTCGTACTGATTGATAGTCCCCACAATTGATGGTGT 3608199 37 100.0 38 ..................................... AGCAGTAAGGGCAGACTTGATGGCCTCAGCCTTGGTGC 3608274 37 100.0 38 ..................................... TGGTTTCCCTTCGTGAGGCGATCGCGCAGATACCGGAT 3608349 37 100.0 37 ..................................... CCAACCTAGAACAAGTTTCAGTAACTCCATCAACCGA 3608423 37 100.0 39 ..................................... CCTTTACGTTTATCCCTGCCAAGATTGCGGATAACCAAG 3608499 37 100.0 34 ..................................... TCTCCAGTCTGGCATCCCGCCAAGACCACACCCA 3608570 37 100.0 35 ..................................... CAGTTATCGGGCCGGCCTTCAACCATTCCTAGAGG 3608642 37 100.0 35 ..................................... CTCAGCTCCGTCTAATTTGTACCACAAATCAAACA T [3608644] 3608715 37 100.0 37 ..................................... TATTTGCCCTGACTCATAAGCCACAATGCCATCAGAT 3608789 37 100.0 36 ..................................... AGTCTCTGTGGCTCCAGCGCAGCCACTGCCACGACT 3608862 37 100.0 37 ..................................... CTTATGGGATAGTGTGTACGCCATAAGAAATAGTGTA 3608936 37 100.0 37 ..................................... TGCATCCGAGTAGTGACTGCTTGGTATTGTCCCACCA 3609010 37 100.0 36 ..................................... ATCGGCGAAACAACTCTGTGGCAGCTTTGCCTGTAC 3609083 37 100.0 38 ..................................... GGCCATTCTTTATCGTCTGGCGCTTTACGAAGGTTGGC 3609158 37 100.0 35 ..................................... GTACACCTGATTCTTGGCACGCCGAAATCGGCGAG 3609230 37 100.0 38 ..................................... AAGTTTTTTCTTTGGGTTTGTTTTTCTCCTTATTTGCC 3609305 37 100.0 39 ..................................... CGCGTAGCTTCTCACCCACGATTTGAAGTGTGAGCGATC 3609381 37 100.0 38 ..................................... TCATTAAAAGCGACTGCATTTATCTGGGCTGCTCTGTA 3609456 37 100.0 34 ..................................... TAATTTTCGGTGTAATTATCCTCCTATTTGTAAG 3609527 37 100.0 34 ..................................... AAATGTACTCATGTTTTTCCTCTCCTATTTTTAG 3609598 37 100.0 39 ..................................... TTGCAGTTCGCCAAACAGGCCATTCGCTGTCCCCTCCAC 3609674 37 100.0 41 ..................................... AAACCAGTCTATATTTGTGCCTTGCACCTGCTGGATAAGTC 3609752 37 100.0 34 ..................................... CTTACTCTGATTGTTGGTATTAAGCTGATTAAGA 3609823 37 100.0 35 ..................................... TGCAAATATTGAGGCTTCATCTAGCAGATAAATCA 3609895 37 100.0 38 ..................................... ATATTCAGGAAAGCGGTAGGCGCGCAAACGCCTGCCGA 3609970 37 100.0 38 ..................................... ATATTCAGGAAAGCGGTAGGCGCGCAAACGCCTGCCGA 3610045 37 100.0 39 ..................................... CAAGGTAAACACAGATGTATCGTTATTTCACCGCATGCA 3610121 37 100.0 34 ..................................... ACATACCCCACAAATATGCGGTTCATTCAGCCGT 3610192 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================= ================== 63 37 100.0 37 CCCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Left flank : GAAGATAAGCGCCGCAATAAAATCCATAAAGTGTTAAAATCTTATGGTCAGCGGGTGCAGTATAGTGTGTTTGAGTGTGAGCTTACGGATACTCAATATGCGAAACTCAGGTCCCGCTTGAGTAAGTTGATTAAGCCGGAGGAGGACAATATCCGTTTTTACTCCCTCTGCGCTTGTTGCTTTGGTAAGGTCGATCGGATTGGCGGACCGTCGCCGGTGGATAGGACCATCTTCTTCGCTTAACCCGATTTTGCGCGGAGGGGTAGGTGTTGGGAGAGGGCAATCAAAATTTTCGCCTGGAACCGTTGACGGGCAAGGTTTTGAGCCCTATTAGAGAAAAAATCGAGCCGCGCAAATCCTGAAACCCTTATGGCACAAGCATTAGAGCGAAATTTTTTTTCAACCCCCTTGACAGCCCAGGAGCTGAAATGGTATTTTTAGATCGATTCGCGCAAATGCACCTTGAAAACTGCATATTCCAAGGGTTCCAGGAGCCCGCT # Right flank : ATTCAGGAAATAGGGACGATACAGTGGGGAAATTGGCTTTTTAATGCCGGAATCACTGGACAAGGAGCTTGAGTTTCGGTTGATTCGGGTTTAGTCCAACTAAAAGGGGCGTTCTTAGCTGCTGACATCCACAGCAAACGTTTTGCTCGGGTCATCGCCACATAAAGTAACCGGTATTCTTCCGCAGTTTTCAGGTCTTGAGCTTGTTTCCAGGCAGTTTCTGGGTCGGGTAGTTCTTTCCCGTGCAGGTGGGCGCGAATTTGCGCCCTCGCTACTTCGGCGAGGGAATATTCCCCCAGAAATTGTCTGGGTGGGGGCACCCAAAGATTACCAGGGATAACCTTTTCATGCAAAAAAGGGAGAAACACCCAGTCCCAGTCCAGTCCTTTGGCTTTGTGCATGGTGATGATGGTGAGGCGACCTTTTTTGGTGTAAACAGACTCGTGGGGGTCTTCTTCTGTATCCACCGGCTCGAATTTTTCGGTGTTGACAATTTCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGAAATTTACCCGAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 8 5626792-5622860 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051168.1 [Phormidium] sp. ETS-05 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================== ================== 5626791 35 100.0 48 ................................... GTTCTCTAATAATGTTGTTCTCAACTCTAGCGAGGGTTTAATGTCAAT 5626708 35 100.0 38 ................................... GCACCTGCCTGAACTGATGCCTCAGGGGGGGCTGGCTT 5626635 35 100.0 38 ................................... GCCTCCATTAATGGACCCCACTCATCATTGTGAACATG 5626562 35 100.0 37 ................................... TCTCCTTCTTTTATTGCTAGCAACTTAACCATATCAT 5626490 35 100.0 35 ................................... TTCAATATAACCAAACAACTAAGGTTATAGGTCTA 5626420 35 100.0 39 ................................... TTAGTCTCTCCCACCTCATAAAGGTTGCTTCATAGGAAG 5626346 35 100.0 44 ................................... TAACTGGAAGATTTCCCAGTTCCATATTCCTTCTGGCGTGGAGA 5626267 35 100.0 39 ................................... TTTTTTAATAGTCGGGACACCATGAAAACTAAGGTTACT 5626193 35 94.3 36 TG................................. TTTAGCTAACTCAGGCATATCTTTAAAGGCATTAGC 5626122 35 100.0 39 ................................... TACACCATAACTATCAGCCATAGCGGGGAAGTATCCAAC 5626048 35 100.0 44 ................................... TGATACTCACATCCTAAATATCCGATATGCTCGGCGAATAGGGA 5625969 35 100.0 38 ................................... TACTCCACTGAGGTTGCCCCCCGACCGCTAGGCGGAAG 5625896 35 100.0 51 ................................... TGCATAGGGTTTTGCCTCTCTTGAGGCGAAATTCTGGAGCTCAGACTCCAG 5625810 35 100.0 37 ................................... TTTCCCAGTGGTCATTTCGACTTCTCGAAACCTCCCA 5625738 35 100.0 44 ................................... TTTGAACCTTCCACACTGAGGGCTTTAATGGCATTGGAATAGCT 5625659 35 100.0 45 ................................... TCAGGGAGTCCCGGTTGTACAGCTTGGAGGCTTTGTCCACCTCAA 5625579 35 100.0 44 ................................... TCTGGAGCTGATACCCCTTCAAAGTAGACTTGCCTTCCTCCTGG 5625500 35 100.0 38 ................................... TCCCTCCGGCTGCCCGCACCCGATAAAACAACTGCTGA 5625427 35 100.0 38 ................................... TAACTTTTCCCTCAATGCCTCTGGGATTTTTCCGACGC 5625354 35 100.0 45 ................................... TCTTTCCGCCGCCTTGGCAATGCGGCCAAGTTGCTGTTTCGCTCC 5625274 35 100.0 38 ................................... TCTCCACCATGATAGGGTTAACCTGTCCTTTTTTTAGA 5625201 35 100.0 41 ................................... TGGAACTTCCACATTGTTTCTGTTGAACCCTTCACTTGGAA 5625125 35 100.0 34 ................................... TTGGCCATGCAATATTCAATCAGAGCCTGTTCCG 5625056 35 94.3 35 AC................................. GAACTCAGGGATAGAAACACCAGAAATGCCGTCTA 5624986 35 100.0 43 ................................... GTTGATTCATCCCCTTTCTCCATTATTTCTTTCTCTATAATAG 5624908 35 100.0 45 ................................... GGGCATAAATTTGGAGCTGGATATATGTTCTATCCAGCTCCTTGA 5624828 35 100.0 39 ................................... GTTGTCTACAAAATCTTTGCTTCCCTGATATTGGCCATC 5624754 35 100.0 39 ................................... GATTTTCCTCACTAGCCATAATCCAGGAGTCTTTCCACT 5624680 35 100.0 44 ................................... GATTACCACATTATCAAAGAGCGACTTGTGCTCTTCGCTCTCCA 5624601 35 100.0 47 ................................... GACCAGTGATAGTTATTCCCAATGCGAAGTGTATAGTAGCTCCGGTT 5624519 35 100.0 38 ................................... GTCTGCACGAGCATAGTTCATGCTCATGAGAACTCTTT 5624446 35 100.0 42 ................................... CCACAAACACCTCTAGCTCTGGGGCTAGATTCTCTGCAATTT 5624369 35 100.0 56 ................................... CTTCCTGACTGCTGGGGCAAACTCTGTCTGCCCCTCCAAAAAAAGGTTGATCTCGT 5624278 35 100.0 36 ................................... CTAGCCCAGTCTCCATACAGGGTTTTCACTGGGTCA 5624207 35 100.0 36 ................................... CTAGCCCAGTCTCCATACAGGGTTTTCACTGGGTCA 5624136 35 100.0 35 ................................... CTTACCCCATTTGGGGTCTCCCTTATAGGTGGGAA 5624066 35 100.0 45 ................................... CGGAGATGCACCCCTGGGAGGGGGATGTGCCGGAGGAACCGACTA 5623986 35 100.0 41 ................................... CTTGTATTGAAATACTAGTAATAAAGCTAAGAGAAGGACCT 5623910 35 100.0 56 ................................... CAGGAATATTACAGTGCTCCATATGTCTATATCCTCCACAATGGAGGGCTGAATAC 5623819 35 100.0 43 ................................... CTAGGTCTTATGACTGAAGGTTTAACCGGGGCTGGCTCTTGGG 5623741 35 100.0 39 ................................... CGGGTAGGACTTACCCCGGAATGAAATCTCCTTCTGTTG 5623667 35 100.0 40 ................................... CACCTTCATAGGTGTGCCCATTTATAACTAACTTGGTTTT 5623592 35 100.0 36 ................................... CATCTCCCGTTTCCATTCAACACCGCCGTCCTTATT 5623521 35 100.0 37 ................................... TACATTGGAATCTCCCGTTTCCATTCAACACCGCCGT 5623449 35 100.0 42 ................................... TGGTAGGGATTTCCCCGTTTGCAGGAGTTGGGTACGCTCCTG 5623372 35 100.0 37 ................................... TCAAAGATAGATAAGATTTTCAATAGCTAAGGGAAAT 5623300 35 100.0 45 ................................... TTCCCGTGAGAAGGCTATAGAAAGCCTCGCCGACAATTACACCAT 5623220 35 100.0 45 ................................... TAGCTTTTCATTCTTAAGAGCTTTGAGAGCAGCCAACCGTTCTTT 5623140 35 97.1 42 ..................................T CATAAAAGGACAGGGGGAAGCATACTGGCTAGAGGCCAGTAT 5623062 35 100.0 56 ................................... CAACTTACTGGCATCATGGCCAGTACATACCACATGAGTGCCCTCCTGGTCATAAC 5622971 35 100.0 43 ................................... CGACTGTCACCATCTACATCCCCCGCTGTGAGAGATATTGACA 5622893 34 74.3 0 ....................A-.T..C..ATTTT. | ========== ====== ====== ====== =================================== ======================================================== ================== 52 35 99.2 41 GTCCCCGCTAGTCGGGGACATCACTTGAATGGAAA # Left flank : CTTTAATCAAAAATATTATGTTTTCGGGGCTTATACCATTTTCAATAAATTATGCAACAGATAGTCAAGGTCGGAGCTGATCGTCCTGCTCTCGAATCCGATCCCCCAACCCCCTTGATAAGGGGGGCACCAGAGATTCCCCCCCCTTTTTAAGGGGGGGTTGGGGGGGATCTAAACTGTTTCGGCATTAAATGCAAATGGTATTATGTAATTTGAATTTTGTTACAATAATCAAATATTAGGGGACCAGAATCGCTCAAAAGCCCTCAGAATGGGTCCTGCAGCGGCTGTGGGGACCCTGGGGAGGGCGCTTCATCACTCGCGAGGGATAGAAGAAATGGGGGCAAATGACGGAGTTTCGTGGAATCCCTCGATAGGTTGCCCAGTAAGGGTTTCAGCGATTGTGAGAGGGGGATTTGGGGGGGTTTGTAGTGGAGAATTTCGGATCCCTCGCAAATCACCTCTTGACACCACGCCTCATATGGGTTTTAATAAGGAGA # Right flank : TTGCGGCCAGAGAAATTTTATCAATTATCAATTATCAATTATCAATTATTATCCCCCGCTCCCCATCGCCTCAAGATAAAATAGGAGTAGAGTCCAGTTACAAGGAGGGACCAGGTTTCTGGTCAGATAAGCCTATCGAGACGATTTATGGGAATTTACAGGGGCTGAAACCGAGCCAAATCAAGCAGCTACAGCGGCTATATCATCAAAGATTGCCGGTGGACTGTTTGACTACACCGGAGTTTGCCCAGCGTTTGGCCGCCATCAGCACAGAAATCGGACAACCGCTCAGCACTTATATCAACCGCCGGGGCCAGGTGATGCGGGTGGGGGTGGGGACGGTACGCCAAACCCAAATTCCAGCTTTAGAATTACCCCGTTATGGTGCGGGCCGTCTGAGCGGGATTCGCTGTATCACTACATTCTTGCAGTCAGAACCACCCAAAGAGGCTGCTCTCACGGCAATGGCGATTCAGCGGTTGGATGCTCTAGTGGTGCTA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCGCTAGTCGGGGACATCACTTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //