Array 1 894432-896439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002276.1 Pasteurella multocida subsp. multocida P1062 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 894432 28 100.0 32 ............................ TGCATACTTAAACGCGCCCTCAAATGCCACGG 894492 28 100.0 32 ............................ GTCTTTCAGTCCAACGGCGAAAGGTGGTAACC 894552 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 894612 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 894672 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 894732 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 894792 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 894852 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 894912 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 894972 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 895032 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 895092 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 895152 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 895212 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 895272 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 895332 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 895392 28 100.0 32 ............................ TTTTGCATTGAACGCTGTCGCGCCGATACTTC 895452 28 100.0 33 ............................ AAGAAAGCAAGAGCAAGTATTCAAGAAGATGAC 895513 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 895573 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 895633 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 895693 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 895753 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 895813 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 895873 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 895933 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 895993 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 896053 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 896113 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 896173 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 896233 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 896293 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 896353 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 896413 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1861833-1861564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002276.1 Pasteurella multocida subsp. multocida P1062 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1861832 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 1861772 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 1861711 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1861651 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1861591 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //