Array 1 14612-22450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQQ01000119.1 Methanosarcina mazei strain 1.H.M.0.1 scaffold35_1_size50505-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 14612 37 100.0 37 ..................................... TTATTGTAATGACTTAGTATGTAAGGATTACACAGAG 14686 37 100.0 34 ..................................... CCCGCAGAATTATTCGAAACATAATTCGTTTCAG 14757 37 100.0 38 ..................................... ATTAGAGATATAGATAGATCGTTTTTTGGAGTGGAAAT 14832 37 100.0 37 ..................................... TATCACCACTTGTAATTATAAGTAAAGAGTTGGACAT 14906 37 100.0 35 ..................................... TGTATACAACATGCCAACTATGCATATCTTTAGAT 14978 37 100.0 34 ..................................... ATCATTCCTTCTTTAACATAACCAGGGACGGACT 15049 37 100.0 36 ..................................... TGCGAGAGTGTTATGGCGACGATCAAAAGCGAAAGG 15122 37 100.0 36 ..................................... TCTATTGTTAGCTTCGATTGTTGCATATCCGGATTC 15195 37 100.0 35 ..................................... TCTGTTATGAAGGGGACACCCCCGATTTAACAGCA 15267 37 100.0 36 ..................................... CCATGAGTAATACGAAAAAACGGCTTAGTATGCTGA 15340 37 100.0 36 ..................................... TAAGGAGGAATTGCAGCGCCTCCAGGAAGCCGGAAA 15413 37 100.0 38 ..................................... CCCTAAAAGTCGGGTCGCTGGGCTGCATATACGTAAAA 15488 37 100.0 36 ..................................... TTATGAGCTTGAAAAAGCCGGGATATGGTATGAGCT 15561 37 100.0 35 ..................................... TCACAAAAGCCGGGATTGCCCCGGTGACGATCGAA 15633 37 100.0 38 ..................................... TCCAGGTGTTGAATCAAGGTATAGAGTACAGCAGTACT 15708 37 100.0 36 ..................................... ACAGTTGATTTCAGGGCAGGGATGAAAAGGGAGTTA 15781 37 100.0 38 ..................................... TGTAATTCTGTCGCGGAGGGGCTGTTGAGTGCTGAAAA 15856 37 100.0 37 ..................................... TCAACATCTTCCGATCTGATAGATATAGATCTGGACT 15930 37 100.0 37 ..................................... GGGCTTATCCTGCCGATTACCATGCACTGAACCCAGG 16004 37 100.0 37 ..................................... GAAGTTATTATGGGGCAGGCGGTGGAACTGGAAGCGG 16078 37 100.0 35 ..................................... AAATTGGTGCGACCAAACTAAAAAAAGAGAATAAG 16150 37 100.0 35 ..................................... AATTCGCACACTCAACAAAAAAAGAACCCCTAGAG 16222 37 100.0 35 ..................................... AGTTCTTCTGGGTCGACTTTCCATATCCGATCAGA 16294 37 100.0 36 ..................................... TTTGGGTATATTCGATATTTATAGGCTCTTAACATT 16367 37 100.0 37 ..................................... TCATGGATATAAAGCCCTTTATCTGCCTGCTGGTATC 16441 37 100.0 38 ..................................... CTCTCGATGTATCCGCTAAGGTTAGCGTGTTGCATAGT 16516 37 100.0 38 ..................................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGAGAA 16591 37 100.0 34 ..................................... AAGTCAGTTGAATCGGATACACAAGCTAATATAG 16662 37 100.0 35 ..................................... AAAAACCTTTTTTTCAGTCTTCTTTTTGTTGATTT 16734 37 100.0 36 ..................................... ATTATTAGCCCGTTTTAATCCCAAATTAATTACCTG 16807 37 100.0 37 ..................................... TAAAAAAAGAGAATTAGAAAGTATGCCTTAAAACAAA 16881 37 100.0 34 ..................................... TATTCTCCTATGGAAAAAGGGATTAATGCGACAT 16952 37 100.0 36 ..................................... GATATTCATCCCTTAGTTCTTCATGCTGTTTGATTT 17025 37 100.0 34 ..................................... ACATATTGAGAATATTGTGCTCTCCGTAAATAGT 17096 37 100.0 35 ..................................... TAGACCGACTCTGTTTTCACGACATCCGTGTCAAA 17168 37 100.0 39 ..................................... AACAGTATCGGATACCGTTTTTGTTTACGCTCCAATCGT 17244 37 100.0 37 ..................................... TTTTTAGTAAGTATCATGCTTTCAGGGAACAATTCAA 17318 37 100.0 36 ..................................... TGAGGGGAAAAAAGAGAATATCCAGAGAGCTCAGGA 17391 37 100.0 37 ..................................... AAAAAAAGAAATTAGTGTCCCATCATCTCAATTCTCA 17465 37 100.0 36 ..................................... AATTTGTTGATGAAATCCCAAGAGGAATAACAAAGT 17538 37 100.0 36 ..................................... GCTCTCTTTTTGGGGTCCCTCAAGAAATTCAATACC 17611 37 100.0 35 ..................................... CCCGTTCCTGTACCTGCTTCTATCTCTACACTCTC 17683 37 100.0 35 ..................................... TATACATCTTACACCAACGCGTAAGATAAGTTTTA 17755 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 17828 37 100.0 37 ..................................... TTGACATACAGTTAAATAAGACGTTTAAGTATATTTC 17902 37 100.0 35 ..................................... CCCGATTCATAAAATAATTCATTAATATATATTTC 17974 37 100.0 35 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAAGAAA 18046 37 100.0 36 ..................................... AATATTTTGTATGCATTTATGTATACAACATGCCAA 18119 37 100.0 36 ..................................... TTGAATATCCAACCACAAACCACACATTCAAATCCC 18192 37 100.0 36 ..................................... ACTTTTTTCTGCGAGGTATGAACATGCCTAAATATC 18265 37 100.0 35 ..................................... AGCGATTCCGCGATTGATTCAAAAGCAGTTAATAA 18337 37 100.0 39 ..................................... CAAGTATAGCAGCCCATCTCGTTTTCTTGAACGCGAATG 18413 37 100.0 35 ..................................... TATACTGCATCCGAGACAATGTTAATAAGTATAGA 18485 37 100.0 36 ..................................... ATCTATACAGAGGTATATTGTGGAACGTTGAGTTTG 18558 37 100.0 35 ..................................... CTGTCCTCAGTCCGTGCCTTCAGGAGGATCCCGGT 18630 37 100.0 37 ..................................... GTTCTTGGGTCACACCCATAGCATGTCTTCTAAGTTT 18704 37 100.0 35 ..................................... GAAACTATACAGAGCGTAATACAGAGAAGGAAGAT 18776 37 100.0 37 ..................................... ATTGTGCTCAAAACATTGTAAGTTTTATTTTCATTTA 18850 37 100.0 35 ..................................... CCCATCCTATAAATCCACAAAGGACATTGAGAAAA 18922 37 100.0 35 ..................................... TAATAAAGTCGCTGCTTTCCGGGCTTGTGCTGCCT 18994 37 100.0 35 ..................................... TATATCATTGAGATATAGTAAGATTAAGTTAAAGT 19066 37 100.0 37 ..................................... TCTTCGATCCAGACCATAAAATCCGAATCTTCTAGTG 19140 37 100.0 35 ..................................... GTTCTGCTTCATGCCCGACCGCATAAATACGAAGT 19212 37 100.0 37 ..................................... TGGAGTGTTTCACCTAAACTCTTCTTACAGAATTGGG 19286 37 100.0 35 ..................................... ATTTCCATCCTGTATTTTGGGAGGAGAATATCACA 19358 37 100.0 38 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACAATAG 19433 37 100.0 35 ..................................... CTGTGCCAACAACCTGATCTACCCTGTGCGAAGTC 19505 37 100.0 37 ..................................... ATTTATGACGGGGCAACTCCGCTTTTAAGAAATCCAA 19579 37 100.0 42 ..................................... GAAGCTGAATAATTAGCAATTGCTTTTGCTACGCCTGACTTT 19658 37 100.0 37 ..................................... TCTTCAAGGCACAGAACATAATCATTAAAGTCTTCAA 19732 37 100.0 37 ..................................... CAGAATTTTGAGGACCTATTTCTAACACTAGCACCAC 19806 37 100.0 36 ..................................... TTCAGCGATGAATATGGAAAATACAAATTTGACCTT 19879 37 100.0 40 ..................................... CCTACTTTATCACCAGGCTTTCCAACTCCGGCGAGTTCTT 19956 37 100.0 35 ..................................... CACAGGCACCTACCCTTGTCATAGAGTTTCGCCAA 20028 37 100.0 35 ..................................... CATATTTTTGCACCGAGCCAGTAAAAGAAACATTA 20100 37 100.0 36 ..................................... TATAATGTCAAAGAGTATCCTATTTTGTCCTAGAAT 20173 37 100.0 34 ..................................... ACCCTGCTTTCGGGGCTGTAAAACTTGACGGTAT 20244 37 100.0 34 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAA 20315 37 100.0 35 ..................................... TGAAAATATAATAACTGCTTCTCCCTCTGGAAATC 20387 37 100.0 34 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATA 20458 37 100.0 35 ..................................... TTAAGGTCGTCGGCATAAGCGACTGATGTATATAA 20530 37 100.0 34 ..................................... CTGTTTTCCTTTTCTTCAAGAAGATAGTTCATGA 20601 37 100.0 36 ..................................... GACGGTACAAAACTTGATGATGTCTACGAAGCAGCC 20674 37 100.0 34 ..................................... TCGACAACCCAATAGGCTATCAATTCAATCCCAA 20745 37 100.0 34 ..................................... TTATCTCTATAAACCTATCTCTTTCTATCTTATC 20816 37 100.0 38 ..................................... TCCTGTTTGCAACAATTGAAGAAGATTTTAAAGTCATT 20891 37 100.0 35 ..................................... AGGGTTGAAATTGCGAGAGGAACAATTGTATTTTC 20963 37 100.0 38 ..................................... ATAAGTATAGACTGTAACCCTTCGAGCCCTACCATTCT 21038 37 100.0 35 ..................................... TATAGTTATCTGAGTTTAACGCTGCACATCCTAAA 21110 37 100.0 35 ..................................... AGCAGTCCACTTTTGATAAAGTCGGTGACGGTTTT 21182 37 100.0 35 ..................................... TAACCTGCATATAGAGCCATTATTAACTGTGCCAG 21254 37 100.0 35 ..................................... CAGTAATATACATGCAATATAATATTTTTAACATG 21326 37 100.0 35 ..................................... TTGTTTCGTCTTTTTCAATCCACCCGTAGTCTATC 21398 37 100.0 35 ..................................... TTAAGAGTCTTGGAAAGGAAAATTCGGTTTTTATT 21470 37 100.0 36 ..................................... TATAAAATTAAGAACGTTGTCATGCTCTCATGCCTC 21543 37 100.0 36 ..................................... TGATGAAGTAATATTCATCTCTAAAAAGGAATACAC 21616 37 100.0 34 ..................................... GACAGTTTAGCATACTTGCAGGAAATGTTTGAAG 21687 37 100.0 37 ..................................... TGCATGTGGGACAGTTGCCTAGACTGCCCGCATATAA 21761 37 100.0 35 ..................................... CATTCCATTTGTTTCCATCCATATCTGTTAATGTA 21833 37 100.0 35 ..................................... AGAGCTCTTCAGGTATCCCCTTTGCAGAATCATAA 21905 37 100.0 35 ..................................... GTAATGACTCTTAACGAAATCTTAATTAGTCTTGT 21977 37 97.3 36 .....C............................... ATAACTGAATTATGAATGATAAATCATATGCTGTAG 22050 37 97.3 37 .....C............................... TTTTGTTAAGTTCGGTGTTAATAAGTTTTAAAAGATT 22124 37 97.3 36 .....C............................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 22197 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 22268 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 22341 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [22346] 22413 37 81.1 0 .G...A...T.GCT......................G | A [22420] ========== ====== ====== ====== ===================================== ========================================== ================== 108 37 99.5 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 15493-28747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQQ01000060.1 Methanosarcina mazei strain 1.H.M.0.1 scaffold31_1_size37607-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 15493 37 100.0 35 ..................................... AAACTGGAAATGATAAGAATGCTTATAAAAACGCA 15565 37 100.0 34 ..................................... TCTCCCAGAAGTTAACCTGCTCAATAAAGAACGA 15636 37 100.0 36 ..................................... ATCAGGGCGGCATCTTCGACTAACCCGGCCTGGTAA 15709 37 100.0 34 ..................................... TTTCAAATACTGCTTTTCGTTTCACATCTAACTT 15780 37 100.0 35 ..................................... TACTATTAAACCAGTATTTACTTGCATAATCTAAG 15852 37 100.0 36 ..................................... AGAAGCTCTGTGTAAGTTTCGGGTGTTGGTAAGTCC 15925 37 100.0 35 ..................................... CGTTTTACTTTTACACCGTTCTGCCAGTGGTCTTC 15997 37 100.0 37 ..................................... AGGATAGCAAGAATATCAGAAGCGTTCATGGCTTCAT 16071 37 100.0 35 ..................................... CAATTGCATGGTCTGAGTACAAAAAAGCAGATGAT 16143 37 100.0 35 ..................................... TTTTGCAAATTAAGCTCATCCCTAATCCATGCCGG 16215 37 100.0 35 ..................................... GTTCACTCCCAATTCTCCTTGTGAACTCTCCCCAT 16287 37 100.0 32 ..................................... TTAAAGCTGCAAATGATGAGGAATGAAGTATG 16356 37 100.0 36 ..................................... TAAAGAAGGCGAGGGCTAACGATTCGATGAAAAAAA 16429 37 100.0 37 ..................................... TTATTCAGGGTCACAGAGTCCCATATTACAATGATCT 16503 37 100.0 35 ..................................... GATATGGATAGATTGTGCCGGATAGGAGCGGATCA 16575 37 100.0 36 ..................................... ATGTGTATGCCGTACACATAGCGTATGAGTTTTAGA 16648 37 100.0 35 ..................................... TACATACGAAATCTGACTACGAATTATATAATTTA 16720 37 100.0 36 ..................................... TACTGAAATAAGGAAATCAAGATTAAAAGCACATGT 16793 37 100.0 35 ..................................... ATTAATGTGCATAGATCATTGACATACATTCTGTG 16865 37 100.0 36 ..................................... CCTATCCTCTTTGTGGACTCTTGCCATTGGATGCCA 16938 37 100.0 36 ..................................... CTCTCAGACGTGCAGGGAATCATAATGTAAGCTTGT 17011 37 100.0 35 ..................................... TTAAAAATATGCCGAAGACCCGGCAGCCTAAAGCG 17083 37 100.0 35 ..................................... ATATTGTTAGCGGACGCGAGTTTTACCGCCGTGGA 17155 37 100.0 35 ..................................... CCGCCGTGGACGTGTCAACCTCCACGTAAAAGCGG 17227 37 100.0 35 ..................................... ATCATCTTGATTTATGGAATTGAGCAGGCGGCAGG 17299 37 100.0 34 ..................................... TTATTATGAAATTAAAATGACCTATCTATCTATA 17370 37 100.0 34 ..................................... CAATCAAAATATCCTACAGAGGATTTTATTATGT 17441 37 100.0 35 ..................................... TTATTATGGTAACGGGCTGGCAGTATCGGAGAGTT 17513 37 100.0 35 ..................................... TAAATTCCACAGGACATGCAATCCTTAATGCATGT 17585 37 100.0 37 ..................................... TAATCTGTATTAAATCTTCATGCGTATATGTACAACT 17659 37 100.0 37 ..................................... CAAAATCTGAGTTCCATGACGAAGCCGGGCGGTACAC 17733 37 100.0 36 ..................................... ATTATCGATATTGAGAAAAGGTTCTCCCATGCGTGT 17806 37 100.0 35 ..................................... CATAACGCGATAAGTTTTTGTCTAGTGTCGTGAAT 17878 37 100.0 35 ..................................... AGTACCCTTAACGATATACTTCTAAAATTCTGACA 17950 37 100.0 33 ..................................... TAATAACACAATTCGGAGCAGTGGTATAGGCGG 18020 37 100.0 35 ..................................... AGGGTTTTTCCGAACGCAGCCGCACACAGTCCATA 18092 37 100.0 35 ..................................... TGGGAAAGTGTTTCTTCGTCCCTACAGAATATAAT 18164 37 100.0 36 ..................................... GTGTATAAGGAGGTAGAATACACTAACCACGTTCAT 18237 37 100.0 35 ..................................... ATTTTATCGCAAATCATCAGAACCCACTGGTATTT 18309 37 100.0 34 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACC 18380 37 100.0 36 ..................................... AAATACTCTTCCCGTGTTTCCGTTATCTTTTCAACT 18453 37 100.0 36 ..................................... TTTTCACCTATTTAGTTTTGTTTGGTTATAAAACTA 18526 37 100.0 35 ..................................... AGTGAAACTCTAAAATCTTTTTGAACAACTCTCTG 18598 37 100.0 35 ..................................... CATGCGCAATTATCGCAGCCCTTACGATCTTCTTC 18670 37 100.0 37 ..................................... TCATTTCTTTGAATAGTGAGTTGTTTTCAAGTTCTGA 18744 37 100.0 36 ..................................... GTTGCCACGCCCGCCCTGGTCAGGGGATATTATCCG 18817 37 100.0 34 ..................................... TGGAAAAAGGGTTTACTGTTAGCCTTAACCCGAA 18888 37 100.0 36 ..................................... ATTGAGTCCCAGGCTGTGTTAAACTGCTGTCTCAGG 18961 37 100.0 36 ..................................... CTGAGTCCAGGACCCCGAGAACTCAGGAGGTAATAG 19034 37 100.0 37 ..................................... CCATGCCATGTTATCCGGATTGCCGCCTAACAGCTTG 19108 37 100.0 35 ..................................... CTGAGTCCAGGACCCCGAGAACTCAGGAGGTAATA 19180 37 100.0 35 ..................................... TGTCCTCTTTGACCTTCTCCAGGCTTAAGTCCGTG 19252 37 100.0 34 ..................................... CCCTGAAATGAAACGGTCACAGGAAACCCAAGAG 19323 37 100.0 38 ..................................... GTATTTTTCCACATGCCATTTTATCACCTTATCAATTT 19398 37 100.0 37 ..................................... AGATGGGCTTCCAGGATGTTCAGATCCACCATTATAA 19472 37 100.0 39 ..................................... TATTACAATTTTTGAGTATGTTTTTATTATCAATTCCAT 19548 37 100.0 34 ..................................... TCAATCATACCCGAAGAATCATATTCCTGCTCTA 19619 37 100.0 35 ..................................... AGGAACGCAAATAATGTACTCGCGGTAATAGAATG 19691 37 100.0 36 ..................................... AGTTCGCACATTTTTATTCACCTCAAGAAATAAAAA 19764 37 100.0 35 ..................................... ATTTTCCCTGATCTGATCTTATCCCCCAATTCATC 19836 37 100.0 35 ..................................... TGCAATTCCACAGACTCAGTGAAACCCATGTCAAA 19908 37 100.0 37 ..................................... CACCAATCACTAGGCAATAAATACGACCCCTTACGAC 19982 37 100.0 35 ..................................... TCTTCCTGCTAACGACACCTCTCACGTCCAATTCA 20054 37 100.0 35 ..................................... TAAGGGATCTGAACAGGCACAGGAAATTCTTTGTA 20126 37 100.0 33 ..................................... ATAATTACAATCGGTTCAATTCCTACATACATC 20196 37 100.0 38 ..................................... TATACTGTTGAAGAGTATCGTAACATGTCCTAGAATCT 20271 37 100.0 34 ..................................... TTCTGACGGCTCAAACCCAACAGTTCCGGGCGAT 20342 37 100.0 36 ..................................... CATAGTAGCAGATGCATCCCCCGGCTTTGTTTCGGA 20415 37 100.0 36 ..................................... TAAAATGTTATTACGCTCCTACCGTCACAAACATGG 20488 37 100.0 36 ..................................... ATGTCCCCCGCGAGTGGATTGCATCGTTGCAGCTTA 20561 37 100.0 35 ..................................... CTGCGAAAAACGCGGCTCAACTGAGGGCAAAAAAA 20633 37 100.0 38 ..................................... TATATGAAATTCAAATTAAATATATGATTAATTGACCG 20708 37 100.0 37 ..................................... ATACAGTTCTCTCTGAAAATGAATCTGTCAGACATGA 20782 37 100.0 39 ..................................... TACTACATGAGGTATCCGTGGGGGAATTATAGTAAACGG 20858 37 100.0 35 ..................................... TAACAAGTGTAACATACCAGGCAGGAAACAAGAAA 20930 37 100.0 35 ..................................... CAGCCTATGCAGCACTCTCCTTCTCGGCAAGATTC 21002 37 100.0 35 ..................................... AATAATAGAAATTACATAAGTAAGTATTAGTTAAG 21074 37 100.0 36 ..................................... ATTTTCCCTTTTATCTCATTCCCTCTTTTTTCCTTG 21147 37 100.0 36 ..................................... TAGATTTTAGCTGTTGCTATCAATTTGCTAACCCCC 21220 37 100.0 52 ..................................... TAGGTATAATTAAAGAACTTTCTTCCCGGGATACCGCGAGAAATAAGTCAGC 21309 37 100.0 36 ..................................... TTCCATGCGATAATGAGGAAAGCGCGAAAAAAACGG 21382 37 100.0 36 ..................................... TCAGGGTATGGAATAGACGGCCTCCACGCAAAAAGA 21455 37 100.0 36 ..................................... TACCTCCTAAAAAAAGAGTTACCGGGAATATCCCAG 21528 37 100.0 36 ..................................... TCTTTGAACCATCTAGCACCTGATACGGCTAGATGA 21601 37 100.0 36 ..................................... TTTTCTCAGCTTTGAAAAGTGCTTCAAGTTCTTCAT 21674 37 100.0 37 ..................................... ACCAACAGGGGAAAATGAGTGCTTTACAGTATAAGCA 21748 37 100.0 37 ..................................... CATAATAAATAAAAATGGTGGGGCCGCCTCTTCGCCA 21822 37 100.0 36 ..................................... AAGAGGTTATCTATTATTTCCTCTTGCATTCCCGGC 21895 37 100.0 37 ..................................... TGCAATGTCGGGGACCAATCCAGGTCAGCCTCGGTCT 21969 37 100.0 34 ..................................... AAGAAAGCAGGTGTCTGAGATGGCCGAAACTCGA 22040 37 100.0 36 ..................................... ACGGGGATGATGTAGAGGACTCAACAGAACAGAATC 22113 37 100.0 35 ..................................... CCCTTCGTACCATCGTTCAAGCCTCCTGCATTTCA 22185 37 100.0 36 ..................................... TAGAAAGAAATAGAGTATCCCATTGCCTCTAAATCT 22258 37 100.0 34 ..................................... TTCATGCGTGCCCGCAGGAGATGGTAAACAATGA 22329 37 100.0 35 ..................................... CAATGCCTCTAAGTCGTACTTTCACATAAAATAGC 22401 37 100.0 38 ..................................... CCAAGTCTTTTCACCTTGTTTCTCAGCGCATTTCCAGC 22476 37 100.0 35 ..................................... TCTGTTTACACATCGTCCTCAAAATCTGTCCTTCA 22548 37 100.0 35 ..................................... TATCATAAGCGAAACCCATCAAGGTTTTGTATCGT 22620 37 100.0 38 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGGAGA 22695 37 100.0 36 ..................................... TTCAACTTCTAAGAGTGCGCTTACCGGCCTTACAGT 22768 37 100.0 35 ..................................... TTAAGTCTGATTTATATTCGTTGTTCATGGGTCAT 22840 37 100.0 36 ..................................... TTTTCATTATTGGTTGTGTAATAAGTAATACAACCT 22913 37 100.0 35 ..................................... ATAATCCAGGAGCGAGAGGACCGGAAAGAAGGGGA 22985 37 100.0 36 ..................................... TTCGGCTACACATATTTTTGCAGACAGCACAAACAC 23058 37 100.0 36 ..................................... TCCACTCCATGAAAATGAAGCACTTGAAACAGCACG 23131 37 100.0 34 ..................................... TAGTCCCAAACCACTCCCCATTTATATTATTTTC 23202 37 100.0 34 ..................................... CACGCTGCCCGGATTTGTGAGACATCCTGATTTC 23273 37 100.0 36 ..................................... TGGAGCTAACCCGGGCAGGTAGGGAGCTACAGGCGG 23346 37 100.0 37 ..................................... TTTCCAGGACCTCGGGAGATGTAGGAACTTAAACCAG 23420 37 100.0 35 ..................................... CCTTATTGTAACTTTTATTGCTGCAGTTGTAGCGT 23492 37 100.0 37 ..................................... TAAGCGGAAACCATGCCATTATATAAGCCAATTGCAG 23566 37 100.0 34 ..................................... TTGTAAGGTTTGCATAAAAACCCCGTGTATAGAA 23637 37 100.0 33 ..................................... CATACGGCACGTCTTCAAGCATTTCCTGCAAGT 23707 37 100.0 35 ..................................... ATCCAGATAGAAAACCAATAATGAAAAGAGCCCAC 23779 37 100.0 36 ..................................... CATAGGAGTCAACGTTCTCAGTATCAAATCTCTTGT 23852 37 100.0 35 ..................................... TTCAGAAATTACCGATCTGGCGGACCAGATAGGCA 23924 37 100.0 35 ..................................... ATCTATTTTTTAATCGACTAAAACACCGCCGGGCG 23996 37 100.0 34 ..................................... TTCCGGTGGGTATGGTTGAAAAATCCGTAAGCGC 24067 37 100.0 36 ..................................... GAAGTATATACAGTTCCGCAACCTGGGCAAATTACT 24140 37 100.0 36 ..................................... ACAGATTAACATATTCAGATTCAAGAGCATCAACTG 24213 37 100.0 35 ..................................... CACGAGGCGAAGAAATGACAACGCTCTCTAAACTA 24285 37 100.0 36 ..................................... TTCTTTTTTCTTTCAACCTGGTCTCCTCTTTTTCTA 24358 37 100.0 35 ..................................... TCTTAATCCTGGAGTCTATGAAATTGATGGTCCTA 24430 37 100.0 36 ..................................... CATTTTCATTTTTCGAGAATACGCAGATCTGCACTT 24503 37 100.0 37 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTTCAC 24577 37 100.0 35 ..................................... CATAAGTGAACTGAGAACGAGTTGTAAGCCTTCTT 24649 37 100.0 36 ..................................... TATACTTTTAGGGTATTATTGTAAATGAAATATAAA 24722 37 100.0 34 ..................................... TGATACAGCAGGGTGCATTAACAACACTTGAATA 24793 37 100.0 35 ..................................... AGCAGTGTTGCCAGGTCTTGGATAGATTTGGACTT 24865 37 100.0 36 ..................................... ATAAATTTGACCCAAGTAACACACTTATAAAAACGT 24938 37 100.0 37 ..................................... ACATCTTTAGTTTATCCGTTTGCGGTTCTTCGTCAAA 25012 37 100.0 35 ..................................... TCAGTGAACTGTATACATAATATGTATCTGTAGTT 25084 37 100.0 35 ..................................... GATAGTGGAGCACTTGCCGGGGTTCTAAAGTATGG 25156 37 100.0 37 ..................................... TCCAGGGGTAAGTATCCACTGCACTCCTTCGCCCATA 25230 37 100.0 37 ..................................... CATGATGTAAGTGTTCTTCGTCGAATCTTTTGTAAAC 25304 37 100.0 37 ..................................... CTGACATACTGCGCAGGTTTCGTCTCAGAGGCATTCT 25378 37 100.0 36 ..................................... AACTTGAATGTGAGAGAGTCGGCATGATAGTCAAAA 25451 37 100.0 34 ..................................... TTATTTTCATTCTTCGCCTTCTGCCTCTTGTCGA 25522 37 100.0 33 ..................................... TATTACGGAGCTTGTGCAGAGATTCAAGGCAGA 25592 37 100.0 35 ..................................... CCTCTGTATATCCAGCTCTGCAAAGTTCCCCAGCT 25664 37 100.0 36 ..................................... ATCAAATTCTATTTTCTTTATTACCGTAACTGGAAT 25737 37 100.0 35 ..................................... GTTATTGAGTGGGTGGTATAAATGATATGTAATGA 25809 37 100.0 36 ..................................... TAAAATTATATTCACATATGATGGGATGACAGCAAA 25882 37 100.0 35 ..................................... TACTAGTAAAGCGTAATACTTATATAGGTGTTACG 25954 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 26026 37 100.0 37 ..................................... AGCTCCATTACCAAAGGTTTTCCGGCAGCTACAATTT 26100 37 100.0 36 ..................................... TACTCACAACGGCACAGCCTATCAACTCTGTTCTAC 26173 37 100.0 34 ..................................... CAATGAAGTGGTCAATCTTCTCAGGAGGTCTAAA 26244 37 100.0 36 ..................................... AAATTAACGCTGAAATTATGAAAATGGGAAAGACTC 26317 37 100.0 34 ..................................... TAGTATTTTTCATCACAAAGGCGCGCCCTGATCG 26388 37 100.0 36 ..................................... AACATGCCGTCGGAGTAAAGGTTCACGACAATTATT 26461 37 100.0 35 ..................................... TAGTCTCAATCGAGGGACTTGTGGAAAGAATTGCT 26533 37 100.0 36 ..................................... CAGGAGATGCTACGGCAGAAATTAAACTCGATGATT 26606 37 100.0 37 ..................................... TGATACCGAGGGACTTCTAATGAAGATACTTAAAAAA 26680 37 100.0 38 ..................................... TAGGACCACATACCTATACAGAGATATCCCTGAAATTC 26755 37 100.0 34 ..................................... AGATAAATAAAAGTGAGAATATAATAGACGCTCT 26826 37 100.0 36 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAAAA 26899 37 100.0 35 ..................................... CAAGTCTAGCGGGGGGATTCCCCCCACAAAAAGGA 26971 37 100.0 35 ..................................... AATTAATGTCCCTGGTGAATCCGTCCCTAAGTAAA 27043 37 100.0 36 ..................................... AATACAATTGGGTATTATTACTATATACAGGTGTTA 27116 37 100.0 37 ..................................... GTTCCTAGATCAAGAATATTATTTTGAAGTGTGCAAT 27190 37 100.0 34 ..................................... CTACATTCACAAAACCAGACTATCAAGTTAACTG 27261 37 100.0 34 ..................................... TCTCAATGAAAAGACAGGGGTAATCACATATTCA 27332 37 100.0 35 ..................................... TTGTCAAATGCGTAGCCTGTGCCGGCCCCTGAATT 27404 37 100.0 33 ..................................... ATGAGTTTACGGGAGCTAAGACGGCAACATGGA 27474 37 100.0 36 ..................................... TAATGGGTGAGCGAAATGGACAGAGACAATCTAGTG 27547 37 100.0 35 ..................................... AAAATTCAGGAACCTTTAGAGAACCTGAGAGGAAG 27619 37 100.0 33 ..................................... ATATGGATTACGGAAAACTTAATAGTATGACGA 27689 37 100.0 39 ..................................... CTCAGAGGAGAGAACGACCACTGGCGATTTCTTAGGGAA 27765 37 100.0 35 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATTC 27837 37 100.0 37 ..................................... TCTGAGAATGTGGTTTCAAAGATTGGATTTGCTGGCA 27911 37 100.0 38 ..................................... CTTATTACGACATTCTGGGGCCTGGGATAGATGAAAAG 27986 37 100.0 34 ..................................... AGTCCTCAAACACTGAACTCGATCACATTGAAAT 28057 37 100.0 36 ..................................... TTATTATGTCAATAATTTATGCGCGGAGAAAAAACG 28130 37 97.3 37 ..................C.................. AAAGTCACTCTGTACTTGATGGAAACGGAGCTACCGT 28204 37 97.3 35 ..................C.................. CTTATTATCTTTCAAGCTCTGTTACAGGCTCAGGG 28276 37 97.3 37 ..................C.................. TCAGGTCGACGAAGGTTTTGAGGGCTGCAACTTTCGG 28350 37 97.3 34 ..................C.................. ACCATCCTCGTAACACATCGTATTAACTGGTTGG 28421 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 28493 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 28566 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 28639 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 28711 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ==================================================== ================== 183 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 8231-1041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQQ01000141.1 Methanosarcina mazei strain 1.H.M.0.1 scaffold81_1_size16447-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 8230 32 100.0 37 ................................ TGGTATAGAATATTCTGCATACTCCTGGTTAACAACT 8161 32 100.0 34 ................................ TTCCATCATATATCGAAACTTCAAGGACAACAAG 8095 32 100.0 35 ................................ TAAGGTAGTCCAAGCCAATATATCAAGTTCGTTAC 8028 32 100.0 34 ................................ TGTATCATCTACAGGTCGCACAATAACAACCCTG 7962 32 100.0 34 ................................ TGGTATCACTGATGCAGTCTGGATACAGAAAGTA 7896 32 100.0 35 ................................ TTCGTTAGCGTATTCGTTTGTTGAAAAATATTCAT 7829 32 100.0 35 ................................ TTTCAGGATGTTGTCTAATATCATGGATAGCCCTC 7762 32 100.0 31 ................................ CCCCAGGCTGCAACATCATGCCCGCCCGCGG 7699 32 100.0 34 ................................ TCTGATGAAGAGGAAGAACATTATCTGGGATACA 7633 32 100.0 34 ................................ CAGGCGGGGTAAACGTTTGACATGGGTTTCACTG 7567 32 100.0 35 ................................ ACAATCAAGAACATCTGAGATTTTTGTATCATCGA 7500 32 100.0 37 ................................ CAAAGACATTTTCAAAGGCACTTTTCAAGGCTACTGA 7431 32 100.0 34 ................................ CTCCTGATATTCTGTACTGGATCAGTCCGAAAAA 7365 32 100.0 35 ................................ ATCACATCATATACCGCACTCTCATCATAATTCAA 7298 32 100.0 34 ................................ CAAAAAACAAAGGTCTATGAAGGAGTATACTGTA 7232 32 100.0 35 ................................ ATAGTCTCAATTGTGCTTTTCAGGTTGTCTCTATC 7165 32 100.0 36 ................................ CCTGATCACATACACAAGGGACACAGTTTTTTCAAC 7097 32 100.0 35 ................................ ACTTAAAGATCAGAACTTAGTAGGCGTTTAAAAAA 7030 32 100.0 35 ................................ TCCATTGATTCAGCCCACGCTTTAAAGAGCTCGTA 6963 32 100.0 34 ................................ ATGCGAAAAATGCGGGCTTAAAAACATGGTAAAA 6897 32 100.0 35 ................................ ACAGAAGGAGTAGATGAAATTGAACGGGCACTCAG 6830 32 100.0 34 ................................ AGCACAACATGGTAGACGCGAATGCAAATTACAA 6764 32 100.0 36 ................................ CTGAGCCTGGTAAGTCCGAGATGTCGGCCAGTTGAT 6696 32 100.0 34 ................................ CCCTTGATGGCGTGAATTAAAGCTTATCTGTGAC 6630 32 100.0 34 ................................ AAAGACATTGAAGCGCATAAACTAGGTCACGAAG 6564 32 100.0 34 ................................ GGATGAAAAACTTATCAATCTTGAAATTGAACAA 6498 32 100.0 32 ................................ TGGGAAGGATAATTCTGCTTACATAAGAGAAC 6434 32 100.0 35 ................................ CAGTTTGACTGTGTGTTTGTGATTCCTACCCCGGC 6367 32 100.0 33 ................................ ATCAATCGAATGATTCAATTCTTCCCACAAATT 6302 32 100.0 34 ................................ AGCAAAAATGATTAACGGGATAGCAGCAGCAGAG 6236 32 100.0 35 ................................ ACGGATGTGCAGGGAAACACGGTGGCTATGCTCTG 6169 32 100.0 33 ................................ CGGTGCAGTGGGTTACATCGACAAAATGCTTAT 6104 32 100.0 34 ................................ AGAAGGGGATTGGATTTTAACTGGCGCCAAGGGC 6038 32 100.0 34 ................................ AGGACAGTTTTTATTATCGTGTCCGCTGGAACCC 5972 32 100.0 35 ................................ ATTATCTAAAATATGGGAAAACGGCAGATGTATAC 5905 32 100.0 34 ................................ TTGCACGTTAGGGACCGCACTAAGCGCGGAAAGA 5839 32 100.0 34 ................................ TTATCAGTGTCGGAGGAATGTGAATGTTCCCCTC 5773 32 100.0 34 ................................ CAACTAAAACACCTTCAGCAGTACCCAAGAAAAC 5707 32 100.0 36 ................................ AAAGAACAAGATCAGGACTTGCACCGCGTACAACTC 5639 32 100.0 32 ................................ TTTTCTCTTTATTTTTTTTATTACGTTAAAAT 5575 32 100.0 32 ................................ AGGGAATCCTGCTCCAGCTACCCTCTCAGGTG 5511 32 100.0 34 ................................ AATTAAAGATAAGGTCACAGAGACAGTAGAACAA 5445 32 100.0 34 ................................ AATGTTATTAAAACAAGAGAAAGTAAGCTGCGAG 5379 32 100.0 34 ................................ TGTTAAATCTGAAATCTTTATGTGAGTCTGTGAC 5313 32 100.0 37 ................................ CTGATCTGTTGCAGCAGGACATATATACTGTTTGATG 5244 32 100.0 32 ................................ AGAATAATTTGTCATTTTTTGCCTATGTCGAC 5180 32 100.0 34 ................................ GGACTTGACGAGCAGAGCGTAAGGACATTGACAA 5114 32 100.0 35 ................................ AGTACAAATGATTGAAGACAAGCTTGCTGCTGGTA 5047 32 100.0 35 ................................ ACATATGAAAGTAATTTATTTGTTACCGAGCCATC 4980 32 100.0 34 ................................ CAAATAATTCAGCCGGGAATTACTATCAGGTATC 4914 32 100.0 34 ................................ TAAAATATGGAAACCCATTGAAATAAATAGAAAA 4848 32 96.9 32 .....G.......................... TTCCGGGGATTGCACATGCAGACGACAACGAG 4784 32 100.0 34 ................................ ATATCGTGGCTCCGAACTGTTTAAAAAGAATAAT 4718 32 100.0 36 ................................ TTGATTCGAAGTTGAATACAGTGCCCCAAGTGCCAT 4650 32 100.0 35 ................................ CTTGCAGGACGGGGCGCAGGGCAAAAACATAAATC 4583 32 100.0 34 ................................ AGAGACGTATCATAGGGACATCGAATGGTTTAAG 4517 32 100.0 34 ................................ TTAATTTATCAGTCTGCTTGCCCGGAAGATTCGG 4451 32 100.0 34 ................................ TGAAAGCTCACAGTCTTCACATCTGATCCATGTT 4385 32 100.0 34 ................................ AATTTTAAAAAAGTGCTTTTCAAATGCTTGTGTT 4319 32 100.0 33 ................................ TAAATGCAAACGGGGCTACAAAAGAAAACAAGA 4254 32 100.0 33 ................................ ATTATTGATTCAATGAACAGGAGCTAAAAAAAT 4189 32 100.0 35 ................................ GGTATTATATGAGATCCGGTTCAGCGAGCTATAAG 4122 32 100.0 34 ................................ TGCTGTGGAATCAGTAATTGAAGCACGCGCAAAA 4056 32 100.0 34 ................................ AGTATCTACAGGGCATTTGTCCCCATCGTCAAAC 3990 32 100.0 34 ................................ ACTAAGTCTTAAATCATACCTGCTCTTCCACCGC 3924 32 100.0 33 ................................ ATTACATCCATGCTCTCAGGCACATATACACGG 3859 32 100.0 33 ................................ CACTAACAGCAACCGAAACCGCTATTCCCGGTA 3794 32 100.0 40 ................................ TGTTAATAAATTTAACAGGTTTATCGTGAAGCCTTATAAA 3722 32 100.0 35 ................................ TTAAAGCACTTCAAGAAACTATACGCGCAAATACT 3655 32 100.0 36 ................................ ATACATATGCGGGCAGTCTAGGCAACTGTCCCGCAT 3587 32 100.0 33 ................................ GTGTGCCATTGTCCATATCGCAGGGCTCTGTAG 3522 32 100.0 34 ................................ GCTTAAGCCATTCCTCAATACCTGCCCTGTACGC 3456 32 100.0 34 ................................ CTCAAATCGAATCAACCCAAGCCGAAGCCCTCAC 3390 32 100.0 34 ................................ TTTGATGAAATGACTATGGATACCTCAGTTGATG 3324 32 100.0 36 ................................ ATAGTGGGGCCGTGCATCTTCGACGAAGACGGTGAC 3256 32 100.0 34 ................................ AATCTTCGGGCAGGATTCACAGACACTATATATA 3190 32 100.0 35 ................................ CGAAACGGGAAGGTGATGGTACGGCGGTAGGGCAG 3123 32 100.0 32 ................................ CATGGAGGAATGTTTGAAACAGTCCAGAGAGG 3059 32 100.0 34 ................................ CTTGCGGGTGCTCCCTGGTTGAATGATTATGAAA 2993 32 100.0 35 ................................ ATCTATCTTGGGCTTTTTGCAACAGTAGTAATGAT 2926 32 100.0 36 ................................ TCCAAACTACTGCCGAAAAACTACAGTATTTACAAA 2858 32 100.0 34 ................................ AATCAAGGATCTCCAGGAAAAACGCGATTCTTTG 2792 32 100.0 34 ................................ ACTTTGATTTTGACGATCCAAACATCCCAAATGC 2726 32 100.0 34 ................................ TAATAATACGAGGTCTTGCATGTGCCTGAGTCAC 2660 32 100.0 33 ................................ TGGAAAGCATCGGGCTTTTAATCGGCTCTGGAT 2595 32 100.0 33 ................................ ATGTTACGGTGGGGGGATAACCTCTTTCAAGGT 2530 32 100.0 36 ................................ CTGGGTAACTTTAATCGTATTCCACATTTTATACAC 2462 32 100.0 33 ................................ ATGTTAGCAGGTGCGGAATCTGTGGAAACTGAC 2397 32 100.0 37 ................................ GCTTTCGATATGGAATTAGCACAGTTAAAAAGAATGA 2328 32 100.0 36 ................................ TATAGATAGTTGAATTGTTAACTCCAGCATTAGCAG 2260 32 100.0 34 ................................ TTCTACGCTTCTTATATTACCGCAGAAACCCGAA 2194 32 100.0 34 ................................ GATCTAAAGATATGCATCGTTGGCATGTTGTATA 2128 32 100.0 34 ................................ GGCATACGGTCGCTTATAGCATGGCATTTAGCAT 2062 32 100.0 34 ................................ AAACGTTATTACAGCATCCTCGACGGTATAACCG 1996 32 100.0 34 ................................ TTTTCCAACTCAGGCACTCTTTCAGCCTGTTCAA 1930 32 100.0 31 ................................ ATTTATCGTGCGAGGTCTTGTTATAGACCAG 1867 32 100.0 35 ................................ ACCAATTGCAATAATCAACAGAATGCCAGAAAATA 1800 32 100.0 32 ................................ ATGGAAGAATTGAAAATTTAAGCTCCGAATAC 1736 32 100.0 33 ................................ TTACAGGCTCGTAACATCCATGAAACATTGCAA 1671 32 100.0 35 ................................ ACTCTCGCGGACAACGTAAACAGAAAATCAGGAGC 1604 32 100.0 34 ................................ TATATATGGGCGAAGGAGTGCAGTGGATACTTAC 1538 32 100.0 35 ................................ ATACTCACCAGCAACATAACCCTTTTTACGTAATC 1471 32 100.0 35 ................................ AAATTCCACAATTAGCTTATGTTGTTGTTGGTGTG 1404 32 100.0 34 ................................ AGAAGAGGGACAAGCCTATCTTTTAAAGCATGGT 1338 32 100.0 33 ................................ ACCTGAGAAAGCCCCAATTAGCATAAACATGGT 1273 32 100.0 35 ................................ TCTTAGACCACGGGGAATACTATCTGATTGCAGGC 1206 32 100.0 34 ................................ TTGATTACGAGAGAATGAAAGACGAGGCTAGAGT 1140 32 100.0 35 ................................ CTTTATGGCTGGGCTGTCCTGGGTAGCTTCAAAAA 1073 32 96.9 0 .............................G.. | G [1043] ========== ====== ====== ====== ================================ ======================================== ================== 109 32 99.9 34 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : AGATATTGACGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTATAGTGATGGTACTGGTTACTTATGATGTAAACACAGAATCAGAGGGTGGAAAAAGCAGGCTGAGAAAAGTGGCAAAAGAATGTGAAAATTACGGGCAAAGAGTTCAGAACTCTGTATTTGAGTGCCTTGTGGACCCTGCTCAGTTTGCAGAGCTAAAACATTCTTTATGCGATATTATGGAAGAGGATAAAGATAGTCTCAGATTTTACTACTTGGGTAAAAATTGGAAAAATCGGGTGGAGCATTTTGGCGCGAAAAAAGGGTATGACCCAGAAGGTTTATTACTTGCATGATGTCTGCGAACCTGTAGTAAACATCAATTTCCCGGGGGTTCGCAGGAAAAATTTGTTCATAATATTTAATTTTTGTGACGGTTTATATCTATAGTCAATACTTAAAATTTTTTAAGACAGAAAAATACAAGATGGTAGAAGTATAACCTTAATTTATTTACA # Right flank : GTTAAAGCTGTGGCCTTGACATTATCAAGAACCATTTTTTATACAATGTCAAGCGAATTTGAAAAATAATAAACGGCAGCAGAAGAATAATATTTTTACGTAAGAAATCTTCGGAAAGCCAATTATTAAAATCTCATATCCCTGCTTCGTACATTGCTTGAAGTAATTCATATTCTGCATTAATGACTTCAGGAGTTCTATCTTTGTTTAATAACGAATTCATTTTATCAAGTGCTCTTTTATAATTTTCAACTTCCACCGGGCAATCGAAGAGATAATTAACTTTTATTTGTGGCTTATCGGGGTTCTCTGCGTTCCATGAAACCCTTAAGAAATTATGGTTCGCATCCATGACCTCAGCATCATAAATAAAGTCCATGCGTTCATGTTTAAGTAATTCAGATTTAGATACCCCACTGTCTACTAACCGCTGCCTGGCTCGTGCCTTTGCCATCTCAAACTCTTTAGAACAGCGCAAGAGTTCAGGAGTATATGATAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //