Array 1 64377-62168 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGN01000002.1 Moraxella catarrhalis strain COPD_M118 NODE_2_length_348864_cov_28.3754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64376 28 100.0 32 ............................ AAGTTTGATGACTGCCAAAAAATCTTTGGCAG 64316 28 100.0 32 ............................ TTGTGTGCCATCAAAAGCAATGCCATTAATCC 64256 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 64196 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 64136 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 64076 28 100.0 6 ............................ TGATTT Deletion [64043] 64042 28 92.9 0 ..........................CT - Deletion [64015] 64014 26 92.9 32 --.......................... TTGCTAAGCCGATGCCTGATACAATGCCGCCA 63956 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 63896 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 63835 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 63775 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 63715 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 63655 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 63595 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 63535 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 63475 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 63415 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 63355 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 63295 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 63235 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 63175 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 63114 27 96.4 0 ...........................- - Deletion [63088] 63092 25 75.0 32 ---AGAA..................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 63035 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 62975 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 62915 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 62855 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 62795 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 62735 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 62675 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 62615 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 62555 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 62495 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62435 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 62375 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 62315 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 62255 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 62195 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 98.8 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //