Array 1 162335-160658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOL01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162334 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162273 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162212 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162151 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162090 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162029 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161968 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161907 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161846 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161785 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161724 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161663 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161602 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161541 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161480 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161419 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161358 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161297 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161236 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161175 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161114 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161053 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160992 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160931 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160870 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160809 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160748 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160687 29 93.1 0 A...........T................ | A [160660] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180824-178842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOL01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180823 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180762 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180701 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180640 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180579 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180518 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180457 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180396 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180335 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180274 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180213 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180152 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180091 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180030 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 179969 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 179908 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179847 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 179786 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179725 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179664 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179602 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179541 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179480 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179419 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179358 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179296 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179235 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179174 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179113 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179052 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 178991 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 178930 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178869 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //