Array 1 38126-43192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAR010000004.1 Shewanella algae strain LC2016-2 NODE_4_length_119925_cov_211.394194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38126 28 100.0 32 ............................ ATTTTACTGAGCCTAACACGCAGTATGTTGCT 38186 28 100.0 32 ............................ TGATCTGTCAGTTCGGCCACGTTTATACATCC 38246 28 100.0 32 ............................ AGTGTAGGCATCAAGTCCAGCTGCCGAGAACC 38306 28 100.0 32 ............................ AATTGCAAATTTACCAGTTGATATCTCATTAG 38366 28 100.0 32 ............................ AATAGGATGGGTGGATCACCATTACACGGATG 38426 28 100.0 32 ............................ AGTGGGACAATGTTGGATCGGGTACTGCTTTA 38486 28 100.0 32 ............................ ACTACACCGACGGCATCATGCACCAGTGGGAC 38546 28 100.0 32 ............................ TGCTGATAAAGATGCCGAGTTGCACCGTTGGA 38606 28 100.0 32 ............................ AACTATGCGCTCAGACGCTTTACGCTCAACCC 38666 28 100.0 32 ............................ GACTTGGTTGAGTGCCAGCCGCTGAGTTACAC 38726 28 100.0 32 ............................ TCTTTAACGAGCCTATGTCCCATCGTATATTC 38786 28 100.0 32 ............................ CAGCACCAGCGCCCCAGTTTGGCGGTCAGGCC 38846 28 100.0 32 ............................ TAATCAAAGGTGAAAATAAAGAGGCATTTCAA 38906 28 100.0 32 ............................ ACAAGCTCATCGTGCATGTTGATTGCTAACTC 38966 28 100.0 32 ............................ TGCTCAATCGTGTCACTCAGCTTGCGCATCTT 39026 28 100.0 32 ............................ TATACGATGGCGGCGCGCTTGGCGGTGCTTAT 39086 28 100.0 32 ............................ TTTGATGAATGCCCACATGTTAACCTCTACTT 39146 28 100.0 32 ............................ ATCCATGTCGGAAATATCCGTCTTGCATATAT 39206 28 100.0 32 ............................ ACTAAATGACGAGCTGTTAGCCCACCATATCC 39266 28 100.0 32 ............................ GCTATTGATGCGGTACATGCCTTGCCTGGCGA 39326 28 100.0 32 ............................ TTGTCAACGTGGCTGTCCTAACTACAGGCTTT 39386 28 100.0 32 ............................ TTCATGTTGTTTTCCATGGATAACCGCATCAT 39446 28 100.0 32 ............................ TCTTGCTAACTTCCGTCACCTTGAGCGTGCGG 39506 28 100.0 32 ............................ TCATCAACGTGCGGCTCGTGCTGCTGAGAATG 39566 28 100.0 32 ............................ TGAAGAACCCAGCAACACCGGTGTCGTACAGT 39626 28 100.0 32 ............................ AATGCAACATATTTTGAAGTATTTTACAGAAT 39686 28 100.0 32 ............................ GTTATCGACGTGTTTCCAGTGAGGCTTAGTGT 39746 28 100.0 32 ............................ ATCGATAGCTCGTCAGCTACTTATGACACTAT 39806 28 100.0 32 ............................ ACTCAGCATACGTACAGTTATTGTTGTCAATA 39866 28 100.0 32 ............................ TTCACCCCGGCGTCGTAGATGCAGAACGCCCC 39926 28 100.0 32 ............................ ATCAAGACAAGAGGAAGCGCAAAGAAAGCGGC 39986 28 100.0 32 ............................ CAATGGGGATTTTCAGTGTGCTGTTTGTGAAG 40046 28 100.0 32 ............................ ATGTAGCGACGGTTATATTCGTCTTCGATGGT 40106 28 100.0 32 ............................ TAATAGGGGGCAATATGAAAGGGCTGTTTTCG 40166 28 100.0 32 ............................ CAGACAGGCGGTCAGGCATTAGGGGTCAGAGA 40226 28 100.0 32 ............................ TTGCCGAAAAAGAGCAGCGAATGCGCCAAACA 40286 28 100.0 32 ............................ ACATAGCCGTCAGGGACACCGCTGGTTTGGCT 40346 28 100.0 32 ............................ CAGATGAAATGGCCGCCGATAGCTCATTAACA 40406 28 100.0 32 ............................ GCAACGCGCGACAAGTGCGCCTTGATTCGATA 40466 28 100.0 32 ............................ TTAACTGCTCAAGATATGCCTCGGCTTGTTTT 40526 28 100.0 32 ............................ GCAGACTAGACAGACTGGCCATTCCAATCCTT 40586 28 100.0 32 ............................ GCTAATCATGGCGCTGAACTCTGCATACAGCT 40646 28 100.0 32 ............................ TTATCGCAATTCCAAGGACGATGGCGCGACAC 40706 28 100.0 32 ............................ AACAGCCGCTTGCGAGAGTATGTGGCGAAGAA 40766 28 100.0 32 ............................ AGTTTCAGGGATTTTTATGGTTTCGCGGATGT 40826 28 100.0 32 ............................ GCACTCGCCAAATTCATCCTTATTTTGTGGAT 40886 28 100.0 32 ............................ TTCATGGTTCCAGTAGAGCACATTTACCTTGA 40946 28 100.0 32 ............................ ACCTGCGACAGTGCCTAGTGAGCCAACTTATC 41006 28 100.0 32 ............................ AGTAAGCCTGCTGGTAATTGCGAACGCCTTTG 41066 28 100.0 32 ............................ TGTGGTATCGGCTGTGCTTTGAACCTGTCCGG 41126 28 100.0 32 ............................ TGGAATGCGGCGACCCGATACCGGATGCCAGA 41186 28 100.0 32 ............................ GCCCAGCCAGTACCCCGGCGTTGTTGCCGTGC 41246 28 100.0 32 ............................ TGTTGACCTATTGTAATACGGCAATTTCCTTG 41306 28 100.0 32 ............................ TACGCGAAATGAAGAGCAATCAGATATTGAGG 41366 28 100.0 32 ............................ CGCGGCACGTAAAGCCACAGCAGCCACGGCCA 41426 28 100.0 32 ............................ TATCATCGCTCAGCGGCTCAGGAACAAGAGAT 41486 28 100.0 32 ............................ GTCAATATCGAGCATGGCTTTGCAGTTCGTAG 41546 28 100.0 32 ............................ TTTTCGATGTTGCAATCACTTGGCAGCTGAGC 41606 28 100.0 32 ............................ AGGCATGCTTCCCACCTGAAAATATTGCCCAA 41666 28 100.0 32 ............................ TTATTGCAGTATTATTAGAAAAATAATTAATA 41726 28 100.0 32 ............................ TAACAGGGTGCCAAAGTGATGAGCAGGCAGAA 41786 28 100.0 32 ............................ TATGTATAGTTTTCTTTACGTTTGCAGGAAGT 41846 28 100.0 32 ............................ TCATCCCACGCCATGCCAATGTCGTTAGATTG 41906 28 100.0 32 ............................ ACCGAAGTGACAGTTACTGAACATACAGTCAG 41966 28 100.0 32 ............................ ACCAATAACGAACGGTACGGGGTTTTACACAA 42026 28 100.0 32 ............................ TGACGATGATGAAGAAGTACTGGCTCCAAGCA 42086 28 96.4 32 .............T.............. CGGACTTTGTTCGCATCGACGGCGTGCCGTAT 42146 28 100.0 32 ............................ TATACGGGCATGCTCGCTGGCCTCGTTGAAAC 42206 28 100.0 32 ............................ TTTCTGGTTTCCCTGGCCAACTCTGAAAACTC 42266 28 100.0 32 ............................ TGTGAAGAGCGCTGGCTATCAGTCGAAGGCTC 42326 28 100.0 32 ............................ CTGTTTGAGAACATGGCGCGCTGGTGTGATGA 42386 28 100.0 32 ............................ GCTTGGTGTGGAGCCTGACGGTTTTAAACCCC 42446 28 100.0 32 ............................ TGGGGCATTGGTTTCAGTCACCATGGCGTAAT 42506 28 100.0 32 ............................ ATTAGTCTTCCTGTTGGTTGGCTATTAATGTT 42566 28 100.0 32 ............................ TCATTGCGAAGAACGATGACGCCATGGCTATT 42626 28 100.0 32 ............................ GAATTGCCAACCTCGCTCCCTAACCCCCCAGA 42686 28 100.0 32 ............................ TTATATTCTGTTGCGACGAAGCAAAAATATTC 42746 28 100.0 32 ............................ ATGAAGATGATTCAATACATTTTGGGCGCTAC 42806 28 100.0 32 ............................ ATGCTGTGTGATAGTCAGTGCCTCGGTAGTAT 42866 28 100.0 32 ............................ CTTCATTGATGTTTAGGTCCATGAACGCGCTA 42926 28 100.0 31 ............................ TCAGCGTCCTTCGGCATTTTTTGAGCTTTGC 42985 28 100.0 32 ............................ TTTCTCAGGCCGAACTGGCGGCGCTACTTGGC 43045 28 100.0 32 ............................ CTACTTTGGTGAAACGATAGCGATCCATAGCT 43105 28 96.4 32 ..........A................. TGGCGCAGATAACGTGGGTCCACCCATTTGTA 43165 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 85 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCAGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGACTGAAGAGGCCGAAACTGAAGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGACCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGACGGGCGCCACTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGTCATGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73926-73118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAR010000008.1 Shewanella algae strain LC2016-2 NODE_8_length_104589_cov_240.454704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73925 28 100.0 32 ............................ CATCGAATGACTGCGGCAATAGCCCCACCAAT 73865 28 100.0 32 ............................ GACAACTGTAAGGGAAAGCACTGTAACAATGA 73805 28 100.0 32 ............................ TGTTGAAGCGCCACTTTTGATAACCCTGAAAT 73745 28 100.0 32 ............................ GCATAGGTGAGATGCATGAGTGGCTAGAGCAG 73685 28 100.0 32 ............................ GCAGACGGCGGCAAAGCGCAGGGATATTTCCG 73625 28 100.0 32 ............................ ATAGTGCCGCTTCTTTGTGCGACTGCAAACCG 73565 28 100.0 32 ............................ ACGAACAATAGCGCCAGCGCGCCCAAAGATAG 73505 28 100.0 32 ............................ GTCTATGATCGGCAACTCATCTAATCGTGATT 73445 28 100.0 32 ............................ TTTAACTTGGCGCATCCTGGCTTCGTGGAATT 73385 28 100.0 32 ............................ AATAACCCGGCTTGGGTTTGGTATGACTTGGT 73325 28 100.0 32 ............................ TTTAAAAATGACTATCAAGAATGGAGCAAAGA 73265 28 100.0 32 ............................ TTTATGAACCAAGCCATGCTGGCATTCAAAAT 73205 28 100.0 32 ............................ AACACGCATGGACTCAATTTGAAGCTATTTTA 73145 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGAACTGCCGAATAGGCAGCTGAAGAT # Left flank : TTTTCACACTCAGTGACATTTCAGAAGTCCCAGATACGTGTAAAGAAGTACGGTTTAAACGAAACCAAACCATCGCCAAGATATTTGCCGGGGACAGTAGAAGGCGATTAGCCCGTTTGAAAAGAAGAGCTGAAGCCAGAGGTAAGCATTTCACGCCTCCTATCCGGAACCAAGCCAAAGAGCTAGGCCCATTTCACTGCGTGGCGGTCAGCAGTGCAAGCACAAGCCAAGACTTTTTACTTCACATACAAAAAGAGACAGTGAATCAGGCGACATCGATTGAATTCAATCAATACGGACTCTCGACTAACCAAAAGTTCACCGGAACAGTGCCAGATCTGAGCCCATTCAAGCCGAACGATACCCGTTAACCCTTTTTTGTGAGCAACGCTTAACCGCCTGAATTTATGCCATTTTCTTCCGCATCTTTTTTAGATGGTAAAAATAGGATAAATTCATCAACCTATTGAACACTAGTGAAATTTTAAATAGTGCTCATA # Right flank : AAAAACAATCGTTTCGATGTTTAAGTTAATGCAAACAACTGCCGAATAGGCAGGGCTTGTTCTACTTACATGACAAGTGAAAGATGCCCCCTTAAGAGGGCATCTTTTTTTATGGGGTAGGCTAGGACAGGTTCTCCAGATCGTTCGTCGTTCAGGCGAATTATGGTTACACTGAGCTAGTACACACGCAGGTATAGAGCAAAGCGAATGGATACGGTACTGCGGCACAAAGTTTGGGAAGTCTATGTAAAAGAGAAAAGGCACCCGATCATTGCCTCGAAAATTACACAACCCAGCAGCGATGGGGTGCAACTACACGATGAAGCACTACTCAAACGCACCATAGCCGAACACACCCACGGTAACGAAACCTACATCACATGCTCTCAATGTGGCTGCGGGCTATTTTATCGCTCCGGCAACAACGCCCAACGCCGGGCAGCCCACCTTTATCACAACACCAAGTTCGCAAAAGACTTGTCACTCACAGAAAACTGCCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //