Array 1 5029-5190 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGUQ010000161.1 Bordetella pseudohinzii isolate Bordetella pseudohinzii 5-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5029 30 100.0 36 .............................. AGCGGGCTGCGGGAGTCGAACCCGCGTAGGGTTCCG 5095 30 100.0 36 .............................. TCGGACTGGCGGATGTAGCAGTGCATCTGAGTTCCG 5161 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GCTAGAGCGCAATTCCCAGTGATCTAGAAT # Left flank : CTGCCCAGCGCGGCTTGCCGCAGCGGCGGCAGCCCGCGCGTGCGCCAGGCCAGATAAGCCAGGCCGGCCGGCAGACCGGCCCACCAATAAAAACCGCCATCGCCGACGGACACGATGGCCCGCGGCGCGGCGCTGTAATCCGGCCACCAGCGCAGCACATAGAGCGCACGGGCGGCCAGCAGGCCGATGAGCAGGGCGTCGAGCAGCACGGCGGCGGCGCGCTTGCCCGTGCCGTCCTTGCGCCACAGCAGCCGCGCGGCCAGCCAGGCCAGGACGGCGGCAAGCGCCACGGCGATCACCTGGACGGAAAATGGGCCGACGCTATGCATGGCTTGCCGCCCAGGACGGACACACGCCCGGAAACACTGACAAACACCGGTAATCCAACCCCATCCACTCCGCCTGCGCTCACAATGACAATCAAGGATCCAGGACTTGGATTAATGGAGCGTTAAGAGGTTCACGTTCTGCCGTGTGGGGTAGTCTGCCAATTTTTTTCA # Right flank : AGTTTCGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAGAGCGCAATTCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 52-417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGUQ010000354.1 Bordetella pseudohinzii isolate Bordetella pseudohinzii 5-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52 36 100.0 30 .................................... AGTGGCGTTTCAGCTGTCATTCCCGTACCT 118 36 100.0 30 .................................... ATCAGTCGCATGAAGCTGCCGCCGTACTGA 184 36 100.0 30 .................................... GGGTGAGGGCGTAGAGGGGAATGTTCATGG 250 36 100.0 30 .................................... ACGTGTTACGACGCGATTTCGCTTCCAATA 316 36 100.0 30 .................................... TGGAACAAGAAGTGATCGCACCGCCGGAAG 382 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Left flank : GAATTGCGCTCTAGCCGGAACGGTCGTCACGCCTTCCCGACCGCCGCTGTCA # Right flank : TATTTGGATTGGTGCAAGTTCTATCTGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 62-361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGUQ010000389.1 Bordetella pseudohinzii isolate Bordetella pseudohinzii 5-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 62 36 97.2 30 .............T...................... AGTCAACGCGCGCCGTCCCTGCATCGCTAT 128 36 100.0 30 .................................... CAGCTTGGCCCGTAGTGAATTCGGATGGAT 194 36 100.0 30 .................................... CGACGGCGCCGTCACGTCCATGACGGGCAA 260 36 100.0 30 .................................... TTCCAGATAGAACTTGCACCAATCCAAATA 326 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTCCGGCTAGAGCGCAATTCCCAGTGATCTAGAAT # Left flank : GGCTAGAGCGCAATTCCCAGTGATCTAGAATAGTTTCGTCACGAGTGGTACTGGAGCGGCCG # Right flank : CTTCCGGCGGTGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCTAGAGCGCAATTCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //