Array 1 1248-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JYSY01000022.1 Salmonella enterica strain CVM 43833 43833_contig_22, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      1247	    29	 100.0	    32	.............................	TTTGCCGATCCCCTTCCAGACCACCCTTTACA	
      1186	    29	 100.0	    32	.............................	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC	
      1125	    29	 100.0	    32	.............................	TTATCCCAATATATTTCGCTATCAGTTACATC	
      1064	    29	 100.0	    32	.............................	GACTGTTTATACCGGATTCCATGCGTTTTCAG	
      1003	    29	 100.0	    32	.............................	GAATTACTGGCTAACGACGAACTGACAGTTGA	
       942	    29	 100.0	    32	.............................	TTCCAGAACCGTTTGACTTACTGTGGCCATTA	
       881	    29	 100.0	    32	.............................	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT	
       820	    29	 100.0	    32	.............................	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT	
       759	    29	 100.0	    32	.............................	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA	
       698	    29	 100.0	    32	.............................	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC	
       637	    29	 100.0	    32	.............................	TTTTGATACGTAGTATTCATTACGCCTCCTAG	
       576	    29	 100.0	    32	.............................	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC	
       515	    29	 100.0	    32	.............................	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC	
       454	    29	 100.0	    32	.............................	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT	
       393	    29	 100.0	    32	.............................	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT	
       332	    29	 100.0	    32	.............................	CGGAGGATGGAATATTTCCGAGGCTGGCGATT	
       271	    29	  96.6	    32	.............T...............	ATGCCGGAACGCTGATGGCGTTTGACATGAGC	
       210	    29	 100.0	    32	.............................	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT	
       149	    29	 100.0	    32	.............................	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT	
        88	    29	 100.0	    32	.............................	TGACGCTGGTCTATACCGGCAACGAACGCGAC	
        27	    27	  93.1	     0	...........................--	|                               	
==========	======	======	======	=============================	================================	==================
        21	    29	  99.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank :  C

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//