Array 1 2372-1794 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBDS01000002.1 Streptomyces sp. N1 Endophyte_N1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2371 29 100.0 32 ............................. TGGGGGCAGGGGCGGCCGACGCGGTCAATCCA 2310 29 96.6 32 ............................G TTGATCCGGGCTGGTCCGGGCTGCTCCGTACC 2249 29 100.0 32 ............................. TTCGCCAGTCCGCCACAGGCCAATGTCCGGAT 2188 29 96.6 32 ............................G CCTGCGAGCCACAGGAAGATGAGGGTGTCGAG 2127 29 96.6 32 ............................G GCCCCGGCCGGAGTTCGCAGCTCCACATGGCC 2066 29 100.0 32 ............................. TGAACAGTGGACGAGGAACCGCCACCTGTCCT 2005 29 100.0 32 ............................. TCCCCGGAACCCCACGGCTGACGACGTTCGCG 1944 29 100.0 32 ............................. TGGCAGCGGGTGGCGTTCGTCCTCCCGCTCGT 1883 29 89.7 32 ....A........C..............T CCGCAGGCGCCTGTCTCCGGGCCTGCCGCGTC 1822 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCTGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACAGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCCGACCCCCGCCGCCTCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCTCGGGGACCATCCCCTGAGTAGGTGTTTGGGGACCATCCCCTGAGCTTGTTCTTTATCTACCAAGATCTTCCGGGCTTACCGATGGCCTTGAGGGTCTCGGGACGTTTGACGGTTTTGCCGACGTCGGAGCGGGGTGCCCGGCGCTTGTTCTTGGCACCGGGTGGCCGTCCGGGGCCGGCGCCGCGGGGTTTGGGAACACGGGCCGGGCAGGCGAGGTGAGCGCGGATGTTCCTGAACCCCCGACGGACCCGGGCGGGGGTGAGCCGGTCGGAGGCGGTGGGTTTCTCCCAGGGCCGGCGGAGGTCCGCGGCGAGGGGCCGGGCGAGCCGGAGCTGGGTGTGAGCGACGATCAGGATCCAGGTCCAGCGGTCCGCCGCCTCGGGAGTACGTAGTCTCGGGGTGGTCCAGCCCAGGGTCTGCTTCGCGAACCGGAAGGTGTGTTCCAGGTCGAAGCGGCGGAGAAACGCCTGCCAGAAACGGTCCACATCGTCCGGGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5498389-5498539 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBDS01000001.1 Streptomyces sp. N1 Endophyte_N1_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5498389 29 100.0 32 ............................. ACCAGGTCCGAGGTGCTGATCGCCGAGTCCCG 5498450 29 100.0 32 ............................. GGCGAGAACGGCGCCGGGGAGGTCACGCTCGC 5498511 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GTCGACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGTGCCGCTTTTTTGCTGGCCGGGCCTCACTTGCCGGCCGGGCTCGGTGGCCTCAATCGCCGGCCGGGCTCGGTGGCCTCAAGCGCCGGCCGGGCTCGGTGGCCTCAAGCGCCGGCCGGGCTGATGGGGGTCGTGTTCGGGGTGCGAGCCGTCGGCCTGTGCGGTCACAGATGGCCTCAATCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGGCGGTGGCCTCAACTGCCGGTGCGGCTGCTGGGGGTTCTGGGAGAGGATGGGCGAGGCTTCGGGCGTGACAGGGGAGGGTGTTTGCTGACTTTCGACCTAATTGCGGCAATCTCGCAAGCTTGCAGAAATGGGCTGAGCTGCTAGGTAAAGCCACAGGTCATCGAGG # Right flank : CATGCGTGCGCAGCTCACCGCCGACTGCGTCGGGTGCTCTCCGCGTCTGCGGGGCCCAGGGAACCCAAGTCCCCGGCCTGCCCAGTGCCACCGGTGGGCGAGGCGCCCCGATTCCGGCGGTGGCAGCCCAGTGTCAGCCTCCTCAGAACGCCAAGATCGTGACCGTGGCCGCGTAGATCACCACCAGTAGGGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //