Array 1 123112-123815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPW010000009.1 Nocardia puris strain BJ06-0122 NODE_12_length_283708_cov_35.279641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 123112 30 100.0 31 .............................. GAACCGTTTTGAGCTGGCAGGCCATGAATTG 123173 30 93.3 31 ............................GT CCCACTCCCGCTTCGAGCGGACCGACCGCAG 123234 30 93.3 31 ............................GC CTTGCGCATCGTTGACACCGATGGTCGTGGC 123295 30 93.3 31 ............................TC GACCTCGACGCCCGCAGCGCCTCCCCGGTCC 123356 30 100.0 31 .............................. ACATCTGGACGCGGCCCGAGCGACTGCTCCG 123417 30 96.7 31 ............................G. CGTAGGTCTTCGCGGCGGTATGGATGTCGGC 123478 30 93.3 31 ............................GT ACGGCAACGAGGCCGCCCACGGCGTGCTGCG 123539 30 93.3 31 ............................GA CGACACCGACCGCCTCGTTCGCCCAGCCCGC 123600 30 96.7 31 ............................T. TCTTCGAATGGCTCTAGTGCGAGAAGTGTCC 123661 30 100.0 30 .............................. AGGGCAGTGGCTGAAGACGGAGGGCGCGCG 123721 29 83.3 31 .....-.....AT............G..G. TTCCCGCGTATGCGGAAGGCGCGACAGCGGA 123781 30 86.7 0 .............CT.C..........A.. | A,T,TCG [123801,123803,123806] ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : CGCACTCGCCCGCGAGGTCGGCCTCACCCCCGACCTCCTCGCCCGCCGTCCCCACGAGGTGAGCGACGGCCAACTCCAGCGCGCCTGCGTCGCGCGCGCCCTCGCCCAGCGCCCCCGCTTCCTCCTCTGCGACGAACCCACCGCCATGCTCGACGCCGCCACCACCGCCGCCATCGCCCGCCTCCTGACCACCCGCGCCACCGCCGGTGACCTCGGCCTTCTCCTGGTGAGCCACGACCGCCCGCTCCTCGACGCCTGCCACGCCCACGTCCACACCCTCACCGCGGGCACCCTCACCACGTGAACGATCCGCCGCACCGCCCCCACCCCACCCCCGGGTACCCTGAACCCGACACGCCTTTCCGCCGGTGCTGAGCAACTGATCCATCGGTGTCTCGGATACGTAACGCCGACGGTCAGGCGTGTCACCTTCACCAACCACCTTCCCGACAGTGGTCGAAAACTTGGTTACCGGCCGGTAGAAGCCCAGGTCAGGAAGT # Right flank : GCCGACGATCCTGAGTGGTCTGCCCTGCATCCGCGCGATCGACAACCTCAGCGCCACGTGCGGAGACCGGGCCCGACATTCGACGGTTCGCGCACGTAAGTCGCTGAGAATACTGTTGTTTCGTAGACCGCCGATCAAATACCCAGCACCCCAACAACTCTCACCGCGTCGTATACCCACCATTGGCGAAGATCGTCTGTCCCGTGATCCATTTCCCGTCGGTGACGAGGAACTCGATCAGCGGGGCGATGTCGGTGATGTCGGTGAGACGCCCGCCGAGGGCCTGGGACTTGTGGAACTCCACGCGCTCCGGAGTCTCCTGCCCGTAGAAGAACGGGGTGTCCATCGGTCCGGGCGCGACGTTGTTCACCGAGATGCCTCGGGATGCGAATTCCTTGGCGGCGGCGCGGGTGAAGTGCTCGACCGGGCTCTTGGCGCCGGCGTAGGTGGAGTACCCGTCGGTGAACGCGGCGAGCAGCGCGGTGAGCACGGTGACGACG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 316676-316222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPW010000002.1 Nocardia puris strain BJ06-0122 NODE_2_length_1114917_cov_42.285993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 316675 30 100.0 31 .............................. CCACGTACATTCGGTCCCGCGACTGCGGCGC 316614 30 93.3 31 ............................TC GGTCCCATCCTGTGATACGAGTCGGATTCGA 316553 30 100.0 31 .............................. CGCAAGCGTTGATCGACGCGAACCCGATACC 316492 30 96.7 31 .............................T CCGAGATCCCCGGCGCGTAAGTGGCCAGCAG 316431 30 96.7 31 ............................G. CCGCCGGGTCGGTGACGGTCGCTTCGGGTTT 316370 30 96.7 31 .............................C TCGTTCCCCCCGGCGACATGTCCGACCCGCT 316309 30 93.3 29 .......................A...T.. CAGTGGTGGTGCCAGAACTCGGGGGTGAA 316250 29 73.3 0 ....-.G...........A.A....CGG.A | ========== ====== ====== ====== ============================== =============================== ================== 8 30 93.7 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : TCGAGGGCGATCATCGCCATCACGCCCGCGTCGGCCTGCACACCGCCCGCCTCGGTGTCGCCCTCCCACGCGTCCGGTTCCCGCCACGCGGCGACGAGCGCCTTCAGCTGCGCCGGGATCCGAGTGCGCCAGTCGGGGGCGAGGTTCTCGCGCCCACCGGGCGGTGGGGACGCACTGTTGCCCACCGATTCCTTGGTGGCTGCCTGGCGGAACGCCTCGGTCAGGCCGACGACATGATCGAGCAAGTCACCGACGGTCATACCGGCACAGGGCGTCGCTGCATCGAGCTGGTCGTCGCGGATACCAGCGACCACCACCGCCAACTCGTCGGCCGCGGTGTCGAGATCGAAGGGCTGCATGCGGGTCTCCTCCGTGGATGGAACCTTCCACCCATATCGACGCCGCGAGCCTCCCGAATTCATCGGGTGCCGGATCCCGATCCGCATTCTCGAGTGGTCGAAAATGCGGTTACCCACGGGTAGAGTGCCAGGTCAAGAAGT # Right flank : GTCCCGGTTGAACCGTCGATTTACCGCCGGGTGCGGGCAGGAAGATTGGCGTGAGTTCACCCCTGGCGCAACGGGATTCGGTCAATCACCGGGACGGTGGCGTTCAGGACTCGGAGGCGGCTCAGGGAGAGTTGGGCCTGGCCGTTCGAGCCGGCGCGGCCGGCGGTGCCGGTCACCGTGCGCAAGGGACCGTTGTAGATGATCTCGTGTGGGACGCCGGGGTGGCGGGAGAGGGCGAGGACGAGGAGGGCGTCGGCGGCGGCGTGGGAGGTGGTGCGGAGTCCGATCGCTCGGCTGCCGTAGGTTCCTTTGATTTCGACCGCGCGGCCGTCGGCGGCGATCGCGTCGTGGCCGGTGGTGGAGGGAGGTTGGAGGGTGATGTCGAACAAGGCTTCCGCCGCGGCTTCCGCGAGGGCACCGACGAGGTGGCCGTCCGGGGTGAACTTCCGACCCGGGTGGAGCGCTTCGAGTTCGGCGACGATCGCGTGGAGCTGCGAGAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8548-9249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPW010000006.1 Nocardia puris strain BJ06-0122 NODE_8_length_371265_cov_36.319620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8548 30 93.3 31 ............................TT TGGCGGGTTCCGCCCAGGTTTGGGTATCTCT 8609 30 100.0 31 .............................. AACAGTCGCACGATGACCGACGAGAATGACC 8670 30 96.7 31 .............................C GTTCGGCCTCACCACGGTCGGCAGCCTCGAC 8731 30 96.7 31 .............................T CATCACGTGACACGCGAGTAAGCTGGTCGTT 8792 30 96.7 31 .............................A ACGCTCCGCCGCGCCGCCGAACCCCTCTCCA 8853 30 93.3 31 ............................CT CCGCAGGAATCGGCGGAGGAGGCGGTGTCGG 8914 30 96.7 31 ............................T. CCTGAGATCCCCGAACCCACCGTCCGCTGCA 8975 30 96.7 31 .............................T GGTGCGCCATCTCTCGGCGGGCGCGCGGCCA 9036 30 96.7 31 .............................C CCTCATTGGTGACGATGACGCGCCGCGGACC 9097 30 93.3 31 ............................CC TGGCGACCGGCGCGCACGGAGTGATCCAGGG 9158 30 100.0 31 .............................. AGTGAACGGCGATGCCTGACACCACGACCCG 9219 30 80.0 0 .......T.....T.......CGT...G.. | C [9238] ========== ====== ====== ====== ============================== =============================== ================== 12 30 95.0 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : TCCCAGCCGAACCCGCCCCCACCCTCACCCTGATCGAGGTGATGAACCGCGCCAACCTCGACTCCACCCACTCCCTCGACGGCCGCGAAATCACCCTCTCCGGCTTCATCCTGCGCGCCGAACACGGCGACGGCCTCGACCTCGCCCGCGTCGCCATCAGCTGCTGCGTAGCCGACGCCCGCTACGTCCGCCTCCACCTCACCGCCCTCCCCCAACCCCTCCCCGAAGACACCTGGATCGAAGTCCGCGGAACGGTAGTCCCCAACAGCGCCCCCACCGACCCAGACCTGACCCCGACCCTGACAGTCCACGACTTTCGCTTGATCGAGCGACCGGAGAACTCCTACGAACGAATCCGCTGAGTGCGAGAGTCGACCCCATCGAGACTTCGCCAACTCGGCACAATTCACGAACCGCCCCGACGCGCCCTCCCGGAAGCCCGGATCGGAGTAGTGGTCGAAAAATGGGTTACCCACCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : GACGGTACGCAGTCAGTCCGACTCGGATTTGGCGAGTTGGCGCACCACCACGCTCGCGGGGCGGAGGGAGCGGGTGCCGACGGTGAGGCCCGGGGCGATGAGCGCGTCGACGGTGCGGTCTTCGGATGGGTCGGTGGTCGACACCACGTCTGTGGCTTCCATGGTCAGCGAGTCGAACGCTGTTCCGGGGCCCGGGGTGAGGAGGGTGGCGCCGCGGCCGGTGAGGAGGCGCTCGATGCGGGTGGTCACGGCGTCGAAGGCGGCGCGTTCGCGCTCGGATTCGGCGGTGGCGGCGCAGGCCGAAGTGTCGCCGTGGAGGGCGAAGAGCTCCACAACCAAGGGCAGGTCCGCCCCCGCGCGGTCGCGGCGGTCGCGCTCCTTCGCCTCGTCGGCCAGGCGGTCGAGGGTGGCGGCTTGGCGGGTGACCACGCGGGTCAGGTCCTCGACGCGTTCGGCGAGTTGGGCGAGGGTCTGCTCGACGGGATCGGTCATAGGCGCAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1242545-1242818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPW010000001.1 Nocardia puris strain BJ06-0122 NODE_1_length_1304011_cov_34.816572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1242545 30 100.0 31 .............................. CCCGCCTCCAGCCGCTCGTAGGTGCGGCGAC 1242606 30 100.0 31 .............................. TATTGTGCGAGATCGCTGTTCACCGCAGATC 1242667 30 96.7 31 .............................C ATTCGCCGGACATATGCAGGTGCGCAGTGAC 1242728 30 83.3 31 A.......................AC..CT CGGTGACCTCGGGATTCAGCTCGATGTCGAG 1242789 30 93.3 0 ........................A....T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : CGCCCCCTCCCCCGGCACCCCAGCGTCCTCAGCCGCTGCTTCCCACTCGGTCAACGCCAATTCCGAACCCGTCCCGAGTTTGCACCGGACGAAACCCGGAAAGCCTTGGGTCACTTCAGCTCCCAGCGCTGAATAGAACTTTCTCGCGCGATCCACATCCGCGACACCGAGCATGATCACACTCACCTGAATCGCCATATCGCTGCCCTCGCTTCGTGGTTGATCGATTCGTTCGCGACGCCGGATTCGCGCCGGTCTCGATTCTTCCCGCACGGCCATCAACCATGCTTCTCGATTCCTGACCGATCGCGCCCCCGACGCACGCAGACGAGACAGCCGCATATCGACCCAGGGCGTCGACCTGCCTCATCTATCGCTGCCCGGTGTTCGCGTCGCACCGCATGCCCACGCAGCCGCGCATCACTCGACGGCCGACTGAGCCCGTCCCAGGAGTGGTCGAAAAAGTGGTTACCAGCCGGTAGACTGCCTGTTCAGGAAGT # Right flank : TGCCTAGTCGATGAACGCCGCAGCCGCGGCACACCCAGACCGCTGCATCCGCGGCCGACACCGCCGTAGCGGATGACCACCTGTTGAGTGGGCGCACGATCATGGCGAATACGGCTTGTCCGCATCAGGTTTCAAACCTGCACAAGTTAATTTCGCTGGGCTCGCCCGTCGAAACTGCCGGATGAATCGAATGACACGAGCTCGAACACGACCGAACCATCCACAATCCGATCATCGAAGTCACCGCAACGAAGCCTGGCTCAGCACACGGCGGGCCAATTCCGCTGCGGTTCCCGTAGTCGTATCGACGACCGCGTCGTAGGGGCATCCATGATCGTGCACTATGTCGAAATGCCCACGCGCCAAACCGATTTCAGTGCGACGACGGGCCAACTCTCGTTGCTCGGCGACAGCGAGGGGACAGTTGACGCAGACCAAGTGAACGCCCAGACCGGCCAGCGCCTCCATCCACATCGGCATAAGATCCGGCGTCAACAGCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1244517-1244728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPW010000001.1 Nocardia puris strain BJ06-0122 NODE_1_length_1304011_cov_34.816572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1244517 30 90.0 30 ........................G...CT CGCCAAGCTGCGTCGGGGCTCGGTAAACAG 1244577 30 100.0 31 .............................. CGTGAGTGTGCACCAGCCATCGCGCCGCCTC 1244638 30 86.7 31 .C............T.........GC.... GCTATCCGATCGGCACCGGCTGGTCGGATCA 1244699 30 83.3 0 ........T........A....G.....CA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.0 31 GTGCTCCCCACGCACGTGGGGATGATCCGG # Left flank : CCCAGTCCTCACCGAAGCCCGCGACACCCTGTCCCGTTATTACGCAACAGAACTCGGCGAACCGTTCACCACCGCAGGCCTCTGCTACTACCGCGACGGCCGCGACAGCGTCGCCTGGCACGGCGACACCTTCGGCCGCGGCGCCACCCACGACACCATGGTCGCCATCCTCTCCGTCGGCGCACCCCGCACCCTCGCCCTCCGCCCCCGAGGCGGCGGCCCCAGCCTCCGCTTCCCCGTCGGCCACGGCGACCTCCTCGTCATGGGCGGCTCCTGTCAACGCACCTGGGAACACGCGGTACCGAAGACGCGTCGGGCGACTGGGCCACGGATCAGCGTTCAGTTCCGGCCGCGAAACGTCAGGTGAAGCCTCCAGGGCCCGTACAGTTGACGTATGGCGCTCGGCTACGACCGGGCACACTCCGCTATCGGACATCACAACGCGAGCCGGAGTGGTCGAAAAACTGGTTACCCGCCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : AACTTCCCGCGTCCAAGCAGGTCTCAACGAACCCACCGCATCGACGCGGTTCGTTCTACGCCGATTTCGGACGAGCGCATGGACTCTCGGGAGCGAGCAGACGAACATGCAGCACTGTGCTCGTGCCAGTGCTCGGATGCCGATAGGTTGATCAACATGACGCACGCGCTGACTGTCATGCCGCTGCACACCATCACCCAGGTGTTCGGCGAGGATGGCCTGCGCGAGAGGTTCCTTCTCGAAATCGAGGACCTGCCGGATCGTGACCGCCTCACCGACGCTCTGGCCCTCGCCACCGAGCTACACCGCAACGACGGCTACGGCGACGAGCCATACATCAACCACCTCTTGCGCGTCGCGATCCGCATCGCCTCGCACTACGAGGTGCGCGACCCGGACATCGTGATCGCCGGCCTCCTGCACGACTCCGTCGAGGACCACCCCACTGAACTCGCAGGCACCTGCCAGGGCTCACCTACCGAGGCCGCGCTCGCCGAACT # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGATCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1247499-1247954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPW010000001.1 Nocardia puris strain BJ06-0122 NODE_1_length_1304011_cov_34.816572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1247499 30 96.7 31 ............................C. GCACCATCGGTTACGAGTGGATGGCGCGCTA 1247560 30 96.7 31 .............................T TCGCGAACTGGCGCAGCGTCATCGACGTGAA 1247621 30 96.7 31 ............................T. CCGGGGCGGTGCTGGCGACAAGTCCAGGTGT 1247682 30 100.0 31 .............................. CCCGCAGCCTCGTGACGGCCCGCTCCGGCGG 1247743 29 93.3 31 .....-.......................T GGACAATGCGGCCGATACTGGGCTAGGGCAT 1247803 30 96.7 31 .............................A CCTGGAGGCCGAAGTGCCACGGGTGGGTGAG 1247864 30 93.3 31 .C...........................C GGTCCAAGGCCACGAAATGGCCGGGGTGATC 1247925 30 83.3 0 .........G................GTCC | ========== ====== ====== ====== ============================== =============================== ================== 8 30 94.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : CGACTTGTCATGGCACGCTCCGATGCACGACCTGCTGCGTCGAGCAGTCGCGGAAGGGCTTGGGGAGCAGAGCATTACGGCGCTGATCGAGTTACTGGCCACTTCTCTGGATCGAGAGTCGACTGCACAACTCACCAGTCAGTGAAGTCCGAGATGTCCGCCCGGTGCGGCAGAATGCGCGCTATTGCCGGCGGGGATCCGCGACGTCGAAACCTGTCTGCGTCAGTGCGGCGGATCGACCGGTCGAGCATTCAGCGGTCAGGCGATTAGTCACGGAGGTCGTCCATGTGCGTATCAGTTGCTCGGCCGGGCGAACAGTCAGGATCCCGCAGGCGATCTCGGCTGCCGGTTCGCTAGGACAGGGGCAAGAAGTCGCGCGGACTATCGCCCCACCGTCGCCGTTCACCTACCTCGGCGATGTCGCACGGCACGCCTCCTCCTCGCCGCACTCAGTGGTCGAAAATCTGGTTACCGACCGGTAGAATTCCTGGTCAGGAAGT # Right flank : CTTCCCGGAGCAGGCCGGGCACGAGGTGGGTCGACCCCCCGAATCGTGGGATGACCGTGGTTACAGATGATCAGGCCCAGCCGTCGAGACACTCCCACCGGTGAGAGATGTCAGGCTTGTTGCAGCACAAAGAAATACGGCTCCGCCAGACCTCTCAGGTCCATGACTCCCAGCAGTGTCGCCCCGTCCACCCTGCGGAAATGGTCGATGATCGGCAAGTGATCGTAAACCATTGCGGCACTGACAATTCCCCGGTACCCGATGTTCCGGAGACGCGCCGTCGGCCTGTCGGTGCGCAGCGCTGGGCGCAGGACAGGGAGGAGTTTTCGACCGGCTTGGACGGCGGGTAGCGGAATACGCCCTGCCAGGCTCAGAGGTACGCGTCGGGGATCGACCGGAAACAGGTTGCCCGCGTCGTCGGCGAAGACAAGCGGGTGCACGAAATCGGCGCTGTCGAAACGCTTTCCATACCAGCCACTCGCGGTCAGCACGCCGTCGAG # Questionable array : NO Score: 3.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //