Array 1 892130-890913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040687.1 Xanthomonas oryzae pv. oryzae strain IXO1088 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 892129 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 892062 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 891996 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 891929 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 891863 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 891795 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 891730 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 891665 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 891600 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 891534 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 891469 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 891403 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 891337 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 891270 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 891205 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 891140 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 891073 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 891008 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 890943 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 19 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGCTTGCGGCGGCGTTTGCGTAGATGCATGAACAACTGACCACCGCGCTTCTGATCGGCGTCGATGTGCCGATAGATCCATGCGTGACTGGCCAAGCCGGTGCGGCCGGCGATCTGTTCGGGACTGGCGTCCTCCCTCAGCAGGACCTCGATCTGACGGATACGCTCAGCGTCGATGCGTGGTCGCCGGCTGGCCTGTGCGCGCCGATGCTCGCTGATGCGCTGCGCGTGATCGGGCTGGTACCGCGCAGCGTGCCGGTTGCGGCGCAGCTCACGACTGATCGTGCTGGGCGCACGCGCCAATACATCGGCGATGGCGCGCATCGACATCCCGGTTTCATATAAAGCACGCAGACGGTATCGTTCTGACAGGTCCAGGCGGCTGGATGACATAGGCAACTCCACTTGGCAATGAAGTCGCTCAGGTCAGGTCGCCTGGACCACTTCACAAGCGTTGGTGTTGCGAATCAGAGTTGAAGCCGCCGCCTAAATCTAGGCACA # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 899163-893222 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040687.1 Xanthomonas oryzae pv. oryzae strain IXO1088 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 899162 31 100.0 34 ............................... TTGGCCTACCCAGCAACTTGATCACATTGATGGT 899097 31 100.0 35 ............................... CGGAACTGGCCGCTCAGAATGTTCTGCGGCACACC 899031 31 100.0 33 ............................... CTGCTTCGACCCAATTCGCATAGGCCCGGCCAC 898967 31 100.0 34 ............................... GAGATCCTCTGTTACATCCCTGCCAACATTAGAC 898902 31 100.0 35 ............................... ACGGTGACGGTGTACGTGCCCCCGGTGTTATTGAC 898836 31 100.0 36 ............................... TATGGCTTCGGCATCGTGTTCAGCAACCCGCGCAAC 898769 31 100.0 35 ............................... CAGATGCTCTGGGCCGTCATGGGTCAGGTAACGGC 898703 31 100.0 34 ............................... AGCTCACGCACGTAATCGTCTATGGGCTGTGAGA 898638 31 100.0 34 ............................... TCAAGATTGCAGATTATCCAGTAGAGGTTCGAGA 898573 31 100.0 35 ............................... TGCGATTTTCGCGGCAGGAAGTATGCAATGGGCTC 898507 31 100.0 36 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGAAG 898440 31 100.0 33 ............................... TAGAGCAACCAACCAACTAGAGGTATGTGTCAT 898376 31 100.0 33 ............................... TAAGATACAACATCGCCCAGCGCACAACGGGCG 898312 31 100.0 34 ............................... CGACGTTGTCCGGACTATGACATACGAGTCAGCG 898247 31 100.0 35 ............................... CCCTTTGGCAGGTATGTAACCTCACATGGGCGGAG 898181 31 100.0 35 ............................... ATCCGTGCAACGCTCTGAGCGCGTCTCTACGGGCT 898115 31 100.0 34 ............................... ATACACTGCTGCTCGATGGGCCCAACAGCACACA 898050 31 100.0 34 ............................... CACCAGGCTTCACCATGGCATTCGACGCTTCTAC 897985 31 100.0 34 ............................... ATTTGCAAAGAAGGTCAGCGGGTCTGTAGAAGCA 897920 31 100.0 35 ............................... ACGGCAAAGTAGTTGCGACCCTCTGCCAATGTATT 897854 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCGAGGGCGCGTGTAGA 897788 31 100.0 34 ............................... TGCCCGCTGATCTGCCTAGTGACATATACGCCAT 897723 31 100.0 34 ............................... CATGACCTTCTGTAGGTCGAGCGTCCCTGGTGCG 897658 31 100.0 36 ............................... CCACACCACGTCGCCGGGCAAGTTCGAGAAGGTGGG 897591 31 100.0 34 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGC 897526 31 100.0 35 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATG 897460 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 897393 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 897327 31 100.0 35 ............................... CTGCGCAGCACAACAAGTGCATTGCGGTCAGAGGT 897261 31 100.0 35 ............................... GTTGCCCGACTGACTGACGCCCAAGGTCTGGCCGA 897195 31 100.0 37 ............................... ATGAGCGCGCATGCGCAGATCAGCAAGCAATGCAAGC 897127 31 100.0 34 ............................... ACAGTAGCAGCAGAGTGGGTGAGACTTGAGGAAC 897062 31 100.0 34 ............................... CGGCTTACAACCCCAAGCTGGGGGCGGGCGTCCT 896997 31 100.0 36 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAAA 896930 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 896865 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 896799 31 100.0 35 ............................... TGGCCCGTGTGTTGCGGAGGATACGTTTTTCCTCC 896733 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 896669 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 896602 31 100.0 35 ............................... ATGTAGCTGGCAAGCTGCGGAGCATCGCTCAGGAT 896536 31 100.0 34 ............................... TCGGCCACGCTGGCGCTGTCGTTGAACGTCATGT 896471 31 100.0 36 ............................... GAGCGTTGGAATCCTATGGTAATACCCCTCCACAGC 896404 31 100.0 34 ............................... GCCAACTCAATCGCCGCCCAGTCAATCGGGTTGA 896339 31 100.0 33 ............................... AGCATCTTCCTTTACCTTCAGGCCGCGGATCAG 896275 31 100.0 35 ............................... TTCCGCCACGATACTGCGTATGTCTGGACACCATC 896209 31 100.0 34 ............................... ACAAGCTGGCTGTAATAGCTGCTTCGCGCAGCAC 896144 31 100.0 34 ............................... GGGAGGGTTATATCCCTCCCAGCATCTCGCCCAC 896079 31 100.0 34 ............................... AGGGTCGATTTGGCGGGCCTGCTCTTGCTGCGCA 896014 31 100.0 37 ............................... CGCCATACAGGGGCGCTACATCATCCATGCTTGCAAT 895946 31 100.0 34 ............................... ACAGTGACCTTGCCTTGATGCGCAATCAGCTGGT 895881 31 100.0 36 ............................... TCAGGCATTCCGCCCTCTTGCCAATAAATAGGCACA 895814 31 100.0 34 ............................... TCGGCATCCCGAAGAACAAGCTGAGGCTAGAGGG 895749 31 100.0 35 ............................... CAAGAAGTTTACCTGGGCGAATGCCTGCTCGTTAC 895683 31 100.0 37 ............................... TCGACGAGCGTGCAGGCCTTGGCAATTCCTTGATGAG 895615 31 100.0 35 ............................... CAAATCTGCTGCCGGGGAATGTCAATCATCTGACC 895549 31 100.0 34 ............................... TTCCTGGGATTCCTATTCGCCATCGATGCAGCAG 895484 31 100.0 33 ............................... GAGCTCATCGAGTACGTTGTTGAGCGTGGTCTG 895420 31 100.0 34 ............................... GAAGGCGCGGGTCTCAGAGACATCGAGGGTCTTC 895355 31 100.0 34 ............................... TACGTCAACGAGCGCAAGCCGCTCGCTCCGCCAG 895290 31 100.0 34 ............................... TGCGCCTGAGGATCTGGTGCTGATGGGTCCACCA 895225 31 100.0 34 ............................... CCTGACCCCGCCGGATACCCGTCTGACCGTCCGT 895160 31 100.0 34 ............................... CAGCAATACTCGCTGCCGTTGCCTCATGGCCAGC 895095 31 100.0 35 ............................... TCCGTTGCTGCTGCAATCAGCTGGTCGAGGTCCTG 895029 31 100.0 36 ............................... CTCTAATTGTTTGGTGCTGCTATGGCACTGCTGACA 894962 31 100.0 35 ............................... AGCTGGGCAAAGCCAAGGAAGGGAGTCAAGCCGGG 894896 31 100.0 35 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACCAT 894830 31 100.0 35 ............................... CCGTCGACAAGCACGCGTCGGGCGATCTGGACGGT 894764 31 100.0 35 ............................... GTGAACAACGCTGCCATCGTTGCTGAGGGCGGCCT 894698 31 100.0 36 ............................... CACGGCTCTTTCTGGGATCAAACCACGGAATATGGG 894631 31 100.0 35 ............................... TGCTTCGTGCTGCTGTGACATGCTTGGCACAATGG 894565 31 100.0 35 ............................... AGCTCAGCCTCAACAGTGTACAGCAGGGCAGCATT 894499 31 100.0 33 ............................... CCATTCTGGTCGCGGGAATTACTCTCGTTCTCC 894435 31 100.0 34 ............................... TTACGTACGCCAGTGGGAAGAAGGCTGGGCAGGT 894370 31 100.0 35 ............................... CGATTGGGGAATCGACCGCTAGCATAGTCCATCCC 894304 31 100.0 33 ............................... AAGGATGACGAGGGTAAGGATCGGGAATACACC 894240 31 100.0 35 ............................... GAGCTATACAACACCTCGAAGACACGCAAAGCGGT 894174 31 100.0 35 ............................... CCATCGTGCGGTGTGCATTGGCATTCTCCCGATCG 894108 31 100.0 35 ............................... AGCCGACATATGACGTGAGCGCGGCGAGTGCTTTG 894042 31 100.0 35 ............................... CCCGTCGCGGCAGCGGATCCATTCAGCGTCGCGCC 893976 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 893910 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 893845 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 893780 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 893714 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 893648 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 893581 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 893513 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 893448 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 893382 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 893317 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 893252 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 91 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CCCTTGGTGCCTATTGTGCCGGCGAATTCAACTCTGATTCGCAACGCTGTTGAGGACCTCCTCGGAGAAGACTTCGAGGGGCGTTTTGAATCCAAGTATCTTGCGCGGACGATTGTAGAGCCGCTGCTCGATCCATCGCAGGTGCGCATCGGTGATGGTGCTGACATCGGTCTGTCGTGGCAGGTATTGGCGTGTCAATCCGTTGGCATTCTCGTTGCTGCCGCGCTGCCATGGGCAGTACGGATCTGCGAAATAGAAATCGCTCTGCAGGCAGGCGGCAATGAGCCGATGATCAGCGAACTCCTTGCCGTTGTCGGCGGTGAGGGTGTGAACTGCATGGCGCAGGCCGCCCAGTCGCTGGACAATGGCGTTGCGCACGTTCTCGGCGGTGCCGTCGGGCGAGTAAGCCAGCAGATGCAGGCGACTGCGGCGTTCGGTCATGCTGACCACCACGCCCTTTCCGTGCGAGGCCCTGATGGTCTCCAGCTCCCAGTCGCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //