Array 1 31335-33344 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJO01000043.1 Stenotrophomonas acidaminiphila strain JCM 13310 contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31335 28 100.0 32 ............................ GCCCGCCCGCAGGGGGTGAGGTGATGGCCCGA 31395 28 100.0 32 ............................ ACAGGCCCTCCTCGGGTCCTGATTCCGCCCTT 31455 28 100.0 32 ............................ TCGTCAAGCCATGAATCAAACTCGCGCTTGAT 31515 28 100.0 32 ............................ TCTGGCTTCCTGCAAAAACAACCTTGTCGAAC 31575 28 100.0 32 ............................ ATCGGATGCAGCACCTTCACCGCTGCGTCGCT 31635 28 100.0 32 ............................ TTAATCCAATCGTTTTCCAGTGGATCGCGCAA 31695 28 100.0 32 ............................ TGCAGGACGGAAAGCCCGTGGTCGAGCACTAC 31755 28 100.0 32 ............................ AAGTCGAGGAATTGTTGGATGGCGCCGGTTAT 31815 28 100.0 33 ............................ ACCGCCTCGAAGTCGCGTTTGGTGAGACTTCTT 31876 28 96.4 32 ..............G............. TGTGGTGACTACCATTTGCCCGCCGGGCACTG 31936 28 96.4 32 ......................G..... GCGCTCAGGTCGTACTGCAGGGCCAGCTTGCC 31996 28 100.0 32 ............................ GATCCGCAGCAGATGGGCAACGCGCTGAACTA 32056 28 96.4 32 ................A........... TTCACGGTGAACTCGGCGAACTCGCCATCGAA 32116 28 100.0 32 ............................ TCCACGCGCTGCTTGTGCCTGACTTCGGCCAC 32176 28 100.0 32 ............................ ATCAAGTCGGCGCCCGGCACCCCGGTCACCTC 32236 28 100.0 32 ............................ TGTGGCGGTCCGGTGCACAGCTGATCGGCGCT 32296 28 100.0 32 ............................ ATCCGCGAGGTATGGAGTCCCGACAACTGCCC 32356 28 100.0 32 ............................ ATTCGACATCGCCGTCGATGTTCGTCCGCTTC 32416 28 100.0 32 ............................ ACCAAGCGACAAGAAGCGCTAGGACAGCTAGC 32476 28 100.0 32 ............................ ATCAGGACGAGATCGCCGTCCTGTGGCGTGTC 32536 28 100.0 32 ............................ TGCCGCGCCCCGGAGCCGGTCGCCTGCTGCGC 32596 28 100.0 32 ............................ ACTTGAAACCTATGCGTATCAACAGTTTCAGT 32656 28 100.0 32 ............................ GTTGTGATCCGGTCATCAATCGGTGTGGGTGA 32716 28 100.0 32 ............................ AGTTCGGGATTGTCGAATTCGCCGTTGATCCT 32776 28 100.0 32 ............................ TGTGGTGACTACCATTTGCCCGCCGGGCACTG 32836 28 96.4 32 ......................G..... GCGCTCAGGTCGTACTGCAGGGCCAGCTTGCC 32896 28 100.0 32 ............................ GATCCGCAGCAGATGGGCAACGCGCTGAACTA 32956 28 96.4 32 ................A........... TTCACGGTGAACTCGGCGAACTCGCCATCGAA 33016 28 100.0 32 ............................ ACCAAGCGACAAGAAGCGCTAGGACAGCTAGC 33076 28 100.0 32 ............................ TGATCGACCAGGGAGCCTCTGTCGCTGGCGCA 33136 28 100.0 32 ............................ TATGGTCGGTGCCAGCGGCAAAGCCACGTCAC 33196 28 100.0 33 ............................ AAGTCGAAAGAGGCTGCAAACTTTCCGCTTTTT 33257 28 96.4 32 ........G................... GACGTGATCGGGCGCGATGCTGCGCTGCTGTT 33317 28 89.3 0 ....G.......G............G.. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.1 32 GTTCCCTGCCGCATAGGCAGCTCAGAAA # Left flank : CACCCTGCGTCGCTTCCTGCAGGAAGATTGGCTCAAGGGTCTGCGCGACCACGTACGCCTTACCGGAATCAACCCGGTTCCGGAAAGGGCGCCGCAGCGCACCGTGTACCGCCGGCAGTTCAAGACCAACGCCGGACGCCTGCGCCGCCGTCGCATGCTGCGCAAAGGGGAGACCGAACAGCAAGCGCAACAAGCCATCCCCCAGAGCGTTGAGCGCCGCCCTAATCTGCCCTACCTGCACCTGCGCAGCCGCAGCACAGGGCAGCCCTTCTGCCTGTTCGTCGCCCTGGGTCCGTTGGCGAACACCCCCACACCGGGAACGTTCAACAGCCACGGATTGAGCAGCACCAGCACCATCCCGTGGTTCTGACCCTATTTCCAGTGAGTCAGTAGCGCTCTTTTAAAATCAGTGACTTGCGGATGCCCCCAGAAATTTGGGGGCATTCCTCTATTCAGGGATTTCCTTAGCATTACCAATGACTTGACGTGAAATTCCTCTA # Right flank : ATGAATTTTATATCTTGGATTCTTTTTGACTTCGCTGGCGAGCAACCACCCCAGGAACCTGCGACGGCATCAAGCTAGGCTGCAAGGCTTTATCTTTCATTACGTTTGGCAGCCGCTGCACTTACGCTACTCCATCTGATGTAGGAGAACGCAAGGCATACACCTATCATCCAAATCCGGACGACTACCCTTGGACTCTTTCAGTGAACTCCCTCCGCCCCTTCCTTGACAAAACCCCCACCCTCGGCCAGCGCGTCTACGTCGACCCCGCCTGCACCATCATCGGCGACGTGGTGCTGGGCGATGACGTGTCGGTGTGGCCGGGCACGGTGATCCGGGGCGATGTGAACCATGTGCGCATCGGCGCGCGCACCAACGTGCAGGACGGCACCATCATCCATGTCAGCCACGAGAGCCCGTACAACAAGGGCGGCTACCCCACGCTGATCGGCGAGGGCGTGACCGTGGGGCATGGCTGCATCATCCATGCGTGCAGCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //