Array 1 5973-6855 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NOAG01000031.1 Escherichia coli strain MOD1-EC5865 MOD1-EC5865_31_length_60096_cov_26.3158, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      5973	    29	 100.0	    32	.............................	CATTTAATGCAAAACTAATTGCACAATAAATA	
      6034	    29	 100.0	    32	.............................	GCGATAAACCTCCTCATCGCTGATATCAATAA	
      6095	    29	 100.0	    32	.............................	ATAAAGGCTCGGCGGCGCAAAAAATGGCACGG	
      6156	    29	 100.0	    32	.............................	CTCTCGTTGTTGTGCCTCAGTACCGGTGCGCG	
      6217	    29	 100.0	    32	.............................	CACACCGGTGCGACGGGAAACGTTCAGCGGCC	
      6278	    29	 100.0	    32	.............................	GGAATAGTTAATTTCGGTGATGGCTGCGTAAA	
      6339	    29	  96.6	    32	............G................	AGTAATGCTGCGTTGAGATGACCAGGCGGGCT	
      6400	    29	 100.0	    32	.............................	TTGACGCCAGCGGCGACCCGCGCCACGGGCTT	
      6461	    29	 100.0	    32	.............................	TAGCCAGACGTACTCGCAATCTGTCGGCGGTC	
      6522	    29	  96.6	    32	............................A	CCAGTTCTCCGTATTCTGTGGTTATCGTTGCT	
      6583	    29	 100.0	    32	.............................	GGAGTTCAGACATAGGTGGAATGATGGACTAC	
      6644	    29	  93.1	    32	............TT...............	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA	
      6705	    29	  96.6	    32	.................A...........	GCAACGACGGTGAGATTTCACGCCTGACGCTG	
      6766	    29	  96.6	    32	.T...........................	GGCGCACTGGATGCGATGATGGATATCACTGA	
      6827	    28	  75.9	     0	..A........C..T....A..-.C...C	|                               	T [6846]
==========	======	======	======	=============================	================================	==================
        15	    29	  97.0	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTCAGAACAAATGTATACTTTTAGA
# Right flank :  CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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