Array 1 216197-216386 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRXK01000012.1 Parabacteroides distasonis strain AF18-10 AF18-10.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 216197 47 68.1 29 AGGT.A.G.AT..A.....A...........C....CAA.......T CTTGGGGCGAATGGTGACGGTTGGCTTGC 216273 47 100.0 30 ............................................... TCTCCTACCAAGGTGATACCCCTGATCAGC 216350 37 74.5 0 ...........C...C.....................---------- | Deletion [216387] ========== ====== ====== ====== =============================================== ============================== ================== 3 47 80.9 30 GTTGTGATTTGTTTTTAAATTAGTATCTTTGATCCATTGGAAACAGC # Left flank : CTCGTGGGGGATTCGTCTGGGGTTGTCGTACAAGCAAGTTCAAGAGAATGCGTCGCTTTCCGGAGTGCTCACAGTTAAGCACCTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCTTAGTTCGCTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGATTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAGA # Right flank : TG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.05, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGTTTTTAAATTAGTATCTTTGATCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 460-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRXK01000045.1 Parabacteroides distasonis strain AF18-10 AF18-10.Scaf45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ================================================================== ================== 459 47 100.0 30 ............................................... TTAATATATTTGTCAAAACTGCCATCACTC 382 47 100.0 66 ............................................... CAAACGAGAAAGATCTAAATTGAGTTTTGTGTTGTGATTTGCTTTCAAATTAGTNNNNNNNNNNGT 269 47 100.0 29 ............................................... GTTGACAAATATACTGAAATATTGATTAT 193 47 100.0 30 ............................................... AACGCCTGTTGAAATATCACATTAGGTAAT 116 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ================================================================== ================== 5 47 100.0 39 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Left flank : TTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGCGCTTCGATGGCACGTTCGGCCCAAAGGT # Right flank : CGGAACTATAAGCTGGATACGATCCGCAAGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.59, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.90,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //