Array 1 640-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACS01000370.1 Ligilactobacillus acidipiscis KCTC 13900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 639 36 100.0 36 .................................... AAATATCGTCAACCTTAATACCCAACGCTTCAGCAG 567 36 100.0 37 .................................... TGAAATTATCTTGAGTCATAGTTTGTTTTGCAAAATT 494 36 100.0 36 .................................... GCACTTTGCATTATCTCCGTTTGCTGCTAAGTCCCA 422 36 100.0 35 .................................... TAATTGCCCTCTTGAAACTGTCGTCGCTAGCATGA 351 36 100.0 38 .................................... CGATTTGCTTGTCTGATAGTTCATCGCATTTGAATTTT 277 36 100.0 36 .................................... CGCTATCATACTCTACACTAACCATGTAGTCAGTTA 205 36 100.0 35 .................................... TTCCCCTGTAAATCCTAATAGTCCGCGTTCTTTAT 134 36 100.0 33 .................................... TATATTTTTATTTTCCATTTTCTCGTCCTCCAT 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 100.0 36 GGTATTAGATGATCCCCGGTAATAGGGGACGAGAAC # Left flank : GTTAAAATACTATTCTACTGATAATTCGTACGAAATTGTAAATAGATTATTGAGTTTAATAAAATTTGTTTTTAACTTAAGTAAAGAATGGTTAATCTTTTTTGAGACGGAAAACAAAAACATTATTTCTCTTTTAGAAAAATGATGTCTGTAAAATGGACAAATCAGCTAGGACTTAAACCTCGTTTGTCCGTTTTTTGGACAAAGAAAAATGGAATAATCATTGATCTTGTGAGGTTTGAAGGATGCTTT # Right flank : CTCAAACGCTGACGAAGATCTTTTTAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTATTAGATGATCCCCGGTAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 1984-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACS01000158.1 Ligilactobacillus acidipiscis KCTC 13900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1983 36 100.0 34 .................................... AATACCTTAACCAACACAATGCAGGTAAATTTCG 1913 36 100.0 36 .................................... ATACGACTAAAGATGATGATGAAAATGTGCCATTCT 1841 36 100.0 36 .................................... AGGGGGCTTCTAAGAGCAAACAGCAAAAGACCAATA 1769 36 100.0 35 .................................... TAAATTACCTGATTTTACATTTGATGAGCTTAACG 1698 36 100.0 34 .................................... TGAACATGCTTGTTAAACCGTTGAAGAAAGAAAA 1628 36 100.0 35 .................................... GTGAATCGCTTTGAATAAGTAAAGGAGAAATAACA 1557 36 100.0 33 .................................... ATAAATTGATGGGAATCCGTAAAGAGCATCAAG 1488 36 100.0 36 .................................... TGACCGCGTCAATGAACAAATCGCTTAGATGGTCAA 1416 36 100.0 37 .................................... CCGAAGTTAATTTGATCTTTTCTCCTATGCCCAGCGC 1343 36 100.0 34 .................................... TAAAATATTCAATATAGCAGTAAAAAAAGCCAAC 1273 36 100.0 35 .................................... ACAAGATACAAATATTCATGTGGCGTCAACTCACG 1202 36 100.0 36 .................................... ACCAAAAAGGAGATTTTATTATGTATACAATATACG 1130 36 100.0 37 .................................... TGATAGCAGAGTAAAACACATTGATAACCGGCCAATG 1057 36 100.0 36 .................................... AATGCTAGGATTCGCACCATCGACAGGTAAAACAAT 985 36 100.0 37 .................................... TGAGAAAATTGAGGTAACTGATGATAGACGCGGTTAA 912 36 100.0 35 .................................... AGATTTTATCATGTATACAATTTATGAATATCAGC 841 36 100.0 36 .................................... TGAAAGACTATCAGGCATATATTGAAGAAACAGATA 769 36 100.0 33 .................................... GCAAAAAATTGTAGATATGGCAATGGAAAACGA 700 36 100.0 35 .................................... AAAGAGTTGGCAAGGCAAAACGATTTGGAGTACAC 629 36 100.0 36 .................................... TAAAAGCACAGGAAAACGGTTGGAACGAGTGGCATA 557 36 100.0 35 .................................... AAAAATGGGACTGTTAGATAAGATTAAGGAAAACG 486 36 100.0 35 .................................... ACAAAAACCAGTGGCATTGTTAGAGAATCTTATTT 415 36 100.0 38 .................................... CGTAAATCAGCACGGTAATCATATCCACAAGATCCAGG 341 36 100.0 39 .................................... TGATTCAGCAGATAGTAGTAAGCATTATGGCGGTAGTCG 266 36 100.0 35 .................................... GATGATTACATGACTATAAGAGATGATTTTTTACA 195 36 100.0 37 .................................... TAAAGGAGATTTTATCATGGATAAAAAAGCTTTAATT 122 36 100.0 33 .................................... TTTAGTGATCGTCCGTGGATGATCCTTGTCGCC 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 28 36 100.0 36 GTTCTCGTCCCCTATTACCGGGGATCATCTAATACC # Left flank : AATGATAGCGCTTTAATCATTGCGTTTAAAACTTACTTTTGCAGGTTAATATTCTATCCCGAAAATACTCTCTCTACTATGCTTATAAAGTATGATTCCATTACACAATACATACATTTTACAAAGAAACTAAAAAAATTTTTAACTCTTTTAAGCCGAGCTGTTGTCGTGTAAGCATTTAATACCACAAGCGAGAGAAAAAGGCTTTCAAAACCTTTTAA # Right flank : CCCAATATTTCTTTTAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCCCCTATTACCGGGGATCATCTAATACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 1083-553 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACS01000155.1 Ligilactobacillus acidipiscis KCTC 13900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1082 36 83.3 33 ....C.AC...G......C...A............. CCTTAATAGCGATCAAACCTATAACAAATTTAT 1013 36 100.0 35 .................................... AAAAAGTTAAACAAAAAGGAGTAACGAAAATGAAA 942 36 100.0 35 .................................... ATGGATATCGGAGAATGGTTGGATTTGTTGGCAGC 871 36 100.0 35 .................................... ATGAAAATCAGAAAAGAAATTTTTGCCTTAACAGT 800 36 100.0 35 .................................... GTGAAGGAGATTTTAACAATGAAAATGTGGACACC 729 36 97.2 35 ...................................A AAGGGGAAATAACAATGAAAATATGGACGCCCGAA 658 36 97.2 34 ...................................T GATAGTATTAAAGAGTAGTAAAAAACAAACAAGT 588 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 8 36 97.2 35 GTTCTCGTCCCCTATTACTGGGGATACTCTATTACC # Left flank : TACTGATTACTATTTTGCGCCATGATCTCTTTTTCATCTTAGTGGAAAATTTAGTTTGAGCAGAAAGTTTAGCTAGTCTATTTTCTTGTCCTAATACAGAATTTGCGTAAACTATCGGAGAATGTTTTTCATCGCAAAACATTAAACCTACATGATGTTTAACTGATTCGCTGACCACCTTAGAAGAAAAAAAGCTATTTAGATTATCAAACACTAGACATTCAACATCATCAAAAGTACAAAACTTTTCGTCCCTGGAAACTAAGTCCACAAATCTATAACCATATTCATTAACAGAAACATAATGTCTCCTTTCAATATACATTATATTCTTCATAAATATCCCCCCAAATATTCAACTAACTCTTTAATTTTAAATAGGAGAAGTATCATACCACAACTAGCCGATTAACAAAAGAAAAAGTTAAAGTGTAGATACTAACCTAAAAAATAAATCATCAGCAACAAAAATATATATTTACCATGATCTGGTACATTAA # Right flank : GTACATCCCACTAATGGTTTGCTATCAAGCTTAACGTGGATTTTGTTTGTCCAAAAAACGGACAAAGCAAGGACATTACCCTAACGATTTGTCTATTTTAAAGACAAATATAGCGATAAATTTAATTTTAAAATCAATGTCCTCGTATTTATATTAACATCTTTATTAGTATTTTTAAAATTAAATTGAAAATATGGTTTAATAATAATTCTTCAGCAATAACAAACCACATAATTTCTGCTTACCAAAACCACCCATCTCGAAAACAATAGTATGAAAATACATTCCAAATAATCAACACTGATGCTTTTACTTAACAACAATAAATTCTTCATCTAACAATCCAGTTCTCCCTAAGTGCCACTTTAAATTCTCTAACCTTTTGACTCGAATCTGTTAGTTTATATTAAATTAGAAACAACCCCACACTGAAAACATCTGCATCCTTGACTGTACTAACTCGCTTTGAGGTACATACCACTGATCACATATACTATGAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCCCCTATTACTGGGGATACTCTATTACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 10302-11854 **** Predicted by CRISPRDetect 2.4 *** >NZ_BACS01000102.1 Ligilactobacillus acidipiscis KCTC 13900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10302 29 100.0 32 ............................. CTGATAGTTGTAGCCACCTTCTTTTGCAGGTA 10363 29 100.0 32 ............................. GAATAATGGATATTAACACAACGAGACTAGCT 10424 29 96.6 32 ............................C ATTTGGGGACAAAAACTACGGTGGATCAAATT 10485 29 96.6 32 ............................C AACGCAATTCGAGATGGTTACGTTAAACTGCA 10546 29 96.6 32 ............................C AAAATGGACGGCTTAATGCAGCCTAAAGAATA 10607 29 100.0 32 ............................. ATAAATCGCTCATGCCTAAGGTGTCAGCAATC 10668 29 100.0 32 ............................. ATAAATCGCTCATGCCTAAGGTGTCAGCAATC 10729 29 96.6 32 ............................C GTGAGTCAGAAGTTGGAACCAAACAAACGACC 10790 29 96.6 32 ............................C TTGTTCAATCTTAGATCCTACGTTTGGCTGCA 10851 29 96.6 32 ............................C AATCATTGATGGTACACTCAGATCCCTTAAAG 10912 29 100.0 32 ............................. TTGGTGATAACGCACGGCCATGATCGGTTGTG 10973 29 100.0 32 ............................. TATGGAAAAGGCATCCGGACATTGACAGCATT 11034 29 100.0 32 ............................. TACCGTGTGTACGATGTGGCCGACGTAAAATA 11095 29 100.0 32 ............................. CACAAAGCATTCGGATTGCCAATTACAGCCGA 11156 29 96.6 32 ......................C...... ATGTTGACGCAATGGGTGCTGTCAAGGCTGGG 11217 29 96.6 32 ............................C GACAGTACAAGGTAGCGATGGATAACCAATAT 11278 29 100.0 32 ............................. AAATATCGTAAGGTTAAGGAAAAAGGCAAAAA 11339 29 96.6 32 ............................C TTTGACATCTGGATAAGCAGTTGATATTTTGA 11400 29 100.0 32 ............................. GTCGCACCGTCAAGGATAGCCTTTGCCTCCCA G [11424] 11462 29 100.0 32 ............................. AGTGATAAGGAAAAGAATGAAAATCAATTATC 11523 29 100.0 32 ............................. TCAATCCATGGCGATTGGACGTTTGATCCGCA 11584 29 100.0 32 ............................. AATGAAATCCAATCCGGTTGGCAAAGTCGATT 11645 29 96.6 32 ............................C AATATTGGCACGTGTGTATATCAGGCGCGTCA 11706 29 100.0 32 ............................. ATCATCGCGCTGTTTTTTTGCTTTAGTAGTTG 11767 29 100.0 32 ............................. TACCGGAACTGATGATCGTATCACCCAGTTCG 11828 27 86.2 0 ............T.....A..--...... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.2 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCAACTGATAAAATTATTTCTATTGGCGCAGTCAAAAAAATTAAAAATGGTGAAATTGATCAATTTTATAAACTTATTCAGGTTAACGATAACATTCAAACGAAAATAACGAACTTAACTGGGATTTCTTCTGACTTGCTAAGGACAAGGGGAATTGATTTGGATTCAGCATTGCAACAATTAAAAAAGTTTATTGGCCAATCAGTCGTTGTGGGGTATAATTTGCGATTTGATCAAGAATTTCTGTCCTATGGTTTCAAGAAAATTGGTCAGCCAGATCTATCCAATCAAATGGTAGATCTAATGCCAGTTATAAAAAAAACAAATAAATTTCTTGATAATTATCGCTTAAGTACGGTACTTAAAGAATACTCAGTCAGAAATTCAAAACCACATCATGCATTATCTGATGCTCAAGCAACCCTTGAATTGGAGACCAAACTCATAGAAAATGGACATTTACTAATTTAAAAATGCTGTTATGGCGGGAATCGTTTAGT # Right flank : TTTACCTAAAGCCAATTCAAGGCTTTTGACTACTGGATTATGAATTAAGCAACGGGGTTATTATTTAAAGATGGTGGTGCCGTAATAGATCAAAATAGAATTCGTCATAAGTGATAGGGCTAATTTAACCAGAAAGAGGTTGTTTGTAGTTATGATGGAATGTTTTTCTCCAGAAACGATTGATCATCTAAAATATTATGTTTATACATATGCTGATCCAACAAATCATGAAATCTTTTATATAGGGAAAGGAATCGGTAATCGAATCTTTGCCCACGAAAAGATGCTGCCCAGGATCGTTATGAAAGTAATAAAATTGAACGCATTAACCAATTAACTCAACACGGTCAGCAACCATAGCTACACATTATTCGTTATGGGCTTAGCGAAACCGAAGCCTTTGTTTTAGAAGCGGGGTTAATCCGGACATTTCTCTATTGTCATCTACATAGCTATTTTAATTCGGATATTGATTTGACTAATAAAGTAGCGGGCCATGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //