Array 1 15807-17621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNR01000131.1 Prevotella disiens DNF00882 contig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 15807 46 78.7 29 T......AA.A..A.C.C.-...C.....................A. TCTGTCCATTGAGTTGGTTCTTGTAACCT AA [15811] 15884 47 97.9 30 A.............................................. AAAGACGGTGGCACAGGCTTACGAGTGGAG 15961 47 100.0 30 ............................................... CGGGTTGAGCCAAACGCACCAATGCAAATA 16038 47 100.0 30 ............................................... TGAAAAATTACGAATTTATTCGTTTGCGTA 16115 47 100.0 30 ............................................... ATCAAGGACTTTTTTCTTTCCGTTATACCA 16192 47 100.0 30 ............................................... GCAGAAGAAGATTTGTATGAAATTGTTGAT 16269 47 100.0 30 ............................................... ACAAAGCCGTTAAAGCATCTTCGCCAAGGT 16346 47 100.0 30 ............................................... TAAGTATCATTTCTCCACTATTAACTCTAA 16423 47 100.0 31 ............................................... GTATTCGACGGTATCAAGATTGGACTGATGA 16501 47 100.0 29 ............................................... CCAATAATAAATGAAACTCCTAAAGACTT 16577 47 100.0 29 ............................................... GGTTGATTATGATTATATATTGAAGGATA 16653 47 100.0 29 ............................................... TTGTAAAGAATTTGTATCTTTGTTATATA 16729 47 100.0 30 ............................................... TCATTGATCCAGAATGGAATTGTATGATCT 16806 47 100.0 30 ............................................... GACAGCACCTGGCATTGTCTCGCCTTTTTC 16883 47 100.0 30 ............................................... TGAAGATGATAAGATAGTGAATGGAAAGGT 16960 47 100.0 29 ............................................... GAATTTAACGGCAAATAAAGATTTTACTT 17036 47 100.0 30 ............................................... GAATACTCCCTACAAAACGTTTACAACGTA 17113 47 100.0 30 ............................................... AATGTCTTCAAGCGTAAGTTTCTCAAGATT 17190 47 100.0 30 ............................................... CGCCTTCAGAGTTTTATGTATTATACAATA 17267 47 100.0 30 ............................................... TGCGTAACTCGCTGCACGAATTAAAGGTGA 17344 47 100.0 30 ............................................... CCAACATCGGCTCGCAATAGGCGCATTCTT 17421 47 100.0 30 ............................................... CCATCTTGATTGGTGGTAAAGGTATTTTCG 17498 47 100.0 30 ............................................... ATACCCACGCATTAGGAATAATGATGTGTA 17575 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 24 47 99.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCAGC # Left flank : TGCTTTGGAGTGAAAATTTCTTCGATTTTACCTTCCTCATCAATAATGAATGTTGTACGATAAGTACCCATATAAGTACGTCCGCACATTTTCTTTTCACCATAAACACCAAATGTTTCGTTGAGTTTCTTATCAACATCAGCAATCAGCGGAAAAGGCAAATCGTACTTCTCTATAAACTTTTTATGCGATTTTTCATCTTGAACGCTAACGCCAATTACAGCATAACCACGCTTTTGCATGAGTTCGTAGTTATCTCTAAAACTGCAAGCCTCTGATGTGCAACCAGGAGTAGAGTCCTTTGGATAAAAATAAAGCACAATTTTCTTACCTTTATAATCACTCAATTTTATTTCATTACCATCTTGGTCAATTCCCAAAAGTTCTGGTATCTTGTCTCCTATATTCATAATTCTTATCTCAGTTATTTATAATATTTGGGTTATCCCACTTACAAAGATACACATATTTTTATAAATCCAAGAATCAAAAGCATTTAT # Right flank : | # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 3531-4990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNR01000108.1 Prevotella disiens DNF00882 contig108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3531 36 100.0 29 .................................... TTGGGTAATATTACACTTACAAAAGGAGA 3596 36 100.0 28 .................................... AGGAAAAAGAAGAATATTCATTTTTGCA 3660 36 100.0 31 .................................... TAGTGCAAAGGTTGCCTTCCATGATTGTATA 3727 36 97.2 29 .........................T.......... ACTGCTTTTTTGGTGTTGTAGGCTTTCAA 3792 36 100.0 28 .................................... TGATGCTGTAGATTCGTTTACTTGTTTT 3856 36 100.0 29 .................................... TCTTCTGGATTGTTGTAAGCAGCATTTGA 3921 36 100.0 28 .................................... ATTATAGTGTCTTCGCTCTCTCCGTTAA 3985 36 100.0 27 .................................... CTTGCGAGGAACAACAATAACTTCCTT 4048 36 100.0 30 .................................... CTTCACTTGGCAAATACATCTACATTAATA 4114 36 100.0 28 .................................... AGTGCAGAGTGAGGTGTTGATAGACCAC 4178 36 100.0 27 .................................... TAAGCGACAACGCCTTTGTACCAATCG 4241 36 100.0 29 .................................... AAGCGAAGGTAAGGGTTTCTATCATTTCA 4306 36 100.0 29 .................................... AGGCTAATTGGCACGATGCGTTGATGATT 4371 36 100.0 28 .................................... AGAACGTAAAGCGCAAAGAAAAAATACA 4435 36 100.0 28 .................................... AGCACTTCCATGCCTTGGAACACTTGTT 4499 36 100.0 30 .................................... TTTATGTATCTGATGGTTATGGCTTTTTGT 4565 36 100.0 28 .................................... TCAAAGTACTACAATACCAAGACGGCGT 4629 36 100.0 29 .................................... TTTCACGGAACTTGCCGTATTGTTGCCAA 4694 36 100.0 29 .................................... TAGCCGACCTTGACCCGAGTGCTTTACGA 4759 36 100.0 32 .................................... AGTAATCATATTTATCACCATGTATTCGTTTG 4827 36 100.0 28 .................................... TTCCAATGTTTCTTTTAAGAAACCGATT 4891 36 100.0 28 .................................... GTGAGGGAGTACCCTATTACTTTGTCAA 4955 36 83.3 0 ............................ACCCCA.. | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 99.2 29 GTCAATAAGACTCATTTAATTTCTACTTCGGTAGAT # Left flank : ATGAAATCGGTTGAAAATTATCCCCAATTTATTAGATAGCGTATGTTGGTAATCAGTTATGACATAAAAAATGATAAGCTAAGAAATAGTTTTAATAAAATGCTTTGCAAGCATGGAGCAATACGCTTGCAATATTCAGTATATGAAGTAAATCATACAAATCGGATATGTGATAATTTAATTCTAAAAATAGAAGCTGAATTTTCTTCAAAATTTGGAGGTGATGATAGCGTGATAATCTTTGATGTTGCAGGAGTTAAATTAAAAAAATATGGCAATGCGATTCATCGGGATAAAGACATAGTGTATTTGTAAATAACAAATATGGGTCTATATAAATTATGAACAAGCTTGGAGTCTTGTTGTAATCAATTAAAATACAATAAATTACACAATATATCCTTTCTTCTTCTAATAATAGGGGGGGATAAAAATGTTTTTGAAAAATCATTTTTTTTTGCGTATATAAAGGAAAAATCGTATATTTGCAACATAATAGA # Right flank : TTCGGGATAAGAAATTGGGGTAATATTTTGTAATTTTGCACTTGCTGGTTTACTTTGCTTTACTAAATATTTTCATGGCACATATAAAAAAGTAGAGTAAAAATTTGGAATTTAAAGATTATATACCTACCTTTGCACTCGCTTACTGAAAAGTAAGGGCGTTTAGCTCAGTTGGTTTAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAATCCGTCAACGCCCACAGGGGTGTTCCCTGTGGTCTTTCGGGGTTGCAGGGATATTTTTTAGAGGGCGTTTAGCTCAGTTGGTTTAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAATCCGTCAACGCCCACGTTAAGTAATAGAGGTTACCTTGCAACGAAACGTTGTGAGGTATTTTGTTTTTATAAACAATCAGAGCCTCAATTTTACAAAATATTATTAGAATTTATTGCTACCAATTCATTTTAAATAGCTAATTTTGCATATTGAATAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAATAAGACTCATTTAATTTCTACTTCGGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 48713-48216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNR01000024.1 Prevotella disiens DNF00882 contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48712 36 100.0 30 .................................... TTAATTCTTCTTCATCACATAGTCGGTTGG 48646 36 100.0 30 .................................... CGTCGAGGGTCACGCCGAGGGCTTCGCGCA 48580 36 100.0 30 .................................... TAAAGCACATAAAAGTTAAAGCGAAAGGGT 48514 36 100.0 30 .................................... TAATAATTTATGTTTAAGGTGCATTTTATG 48448 36 100.0 29 .................................... CAATTCAACAAAAGGAATACCACTCATTC 48383 36 100.0 30 .................................... TCGTGAGGTATTTCATAGATTAAAGGATAT 48317 36 100.0 30 .................................... TTCAAGAAACAAAATACAATCAGCTTCTCG 48251 36 97.2 0 ................................C... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Left flank : AGAAATATCATTAATATAATGCTTATGTCCAAATACTGATTATTGTTCAAAAATTTGCAAAGATAGAGAAATGAGTGAATTTAGATTAAATGCTTACCATATTATGTGGCTATTTATTATGTTCGATTTGCCCACGATTACAACAAAGGATAAAAAAGAATCTGCTCGATTTAGAAAAGATTTAGAAAAAGATGGCTTTACAATGCATCAGTTTAGTATCTATATTCGGTATTGTGCATCGTTAGAAATAGCCAAAGTGCATATAAAACGAGTAAAATCACTTGTACCTTTAGCAGGAAAAGTTAGCATACTAATGGTAACTGATAAACAATATTCTAAAATGATAAATATTTGGGGAGGAATAAAGAAAAAATCTCCTTCAACACCTGTACAGTTAGAACTTTTTTAGTAAATTTGCAGTTAAAAGATTATATCAAGTTCACTTCATATAACATAAAAATATTATAACTCGTTGTAAAACAGTTTGCTATGCAATGTAT # Right flank : GAACAACGTTCAATAGAAGTGTGTTACAGAGTTGGGAAACAAAAGTTCATAGGAATGCTTTCATGACAATATTTTGTAAACTTGTGCTTGTTAGTTGAACTCACTGAACCAACATATTCTTTTAAACGTTAATAAGGTTTAAATACACCTGTTGGCTAAGATAAAATTTGGTAGTTTCAAAAAAAAGTACTACCTTTGCACTCGCAATTCAGAGATAACACAACATCTTAATTACAATTGCATGGTTAATATCGCGGGTTGGAGCAGTTGGTAGCTCGCCAGGCTCATAACCTGGAGGTCGCATGTTCGAGTCCTGCACCCGCAACAAGTTTCAATAAGTCGCTCATTTTTGAGCGACTTATGTGCGTTTATAAGATAGAATTATTCATGATAATTTTGTCTCAGCGGATTTTTCCAGTTGGTAAAGCGCAGTATTGAACATAAAGTTCATACCTTTGCAGTATGAAATCAGACGCATTATTACGGCTCAGTAGGAAAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 10441-10208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNR01000075.1 Prevotella disiens DNF00882 contig075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10440 36 100.0 30 .................................... CATAATCGTGAGCAATTAGATAAGTGTATC 10374 36 100.0 30 .................................... AAACTTAGGAACTTTCAACATCATCGGATA 10308 36 97.2 29 .......................T............ CTGGGTATGCTGTTCTTTTTCTCGTAATA 10243 36 91.7 0 .......................T..........CG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GGTGTTAATGCACTGTAAATGTAGGTGATATACAGC # Left flank : AGATGCCGAGACTACATAAGGGACTGAATAGGCGACTGTTTTTTATTTGAACGAACTTATATGCCAAAAGTCAGAAAATCCTCAATTATTTTATAGACTGATAAGAACACGAGCTTGGGGTTCGTGGTCGCTACGGCATAGAACAATATAATCCTATACCTATATAATATTGAATATAGATATGGGATAACGGATTTATGCCGTTCGACTCGGCTCGTTGGTGGAGGTTGTGGTAATGAGTTGCGGGTTCGATTCCCGCTTCATAGTGGTCTATCAACACCAAGCTCACTCTGCACTGAAACATGGTGCTGCAATCGAATTGGGAGTGAGCGCAAAAAAATAATTCGAGCGGGCTGTACCGCTTTAAGCTGAGGGAATTTTTACCACTCGGCAAGTAGCCTAACAATTTGTTATGCAAGTAGTTACAATAAACATGGTGTATAGCATACCAATTTGTGTGGTGCATACAGCTCCTAAATTCGTTAAAACTTTCCGAATGG # Right flank : TGATACATAGTAATAATATAATAATAAAAAATGTAAGCAATATGCAGATATTAGAACAAAAGGTTGAAGGTAAGGACATGATGCAATTTATGGCAGACCTTCTTGAAAAGAATGAGAAACAAGAGATTGAAATTGAGAGAGGAAAGTTATCAGTTTCTATCCTCAAACAAATGAATAACTATTCTCGACTAAAACTCGATGCGGAAAAATTTGAGTTGAAAAAAGCAGAAAGTGGTCTCCATAATATAGGAGAATGAACAACTATGAAACTCAAGGACGAAGAAGAACCATACTACCTTGTGGACTTTTGTCGGAGAAAAGACTGCCAACAGATTAAGGTGGTTGATACCAACGACGAGGAAATAAAAGATTTCCTAACTGGTATATTCGAGAACAAAAGAAAACAAGGTAATGCAATTAAGGCTGATGGGACTTTGGTTAAAGTGCGCAGCATTAGTACAAACAAGACTTCTTGCAAGCAACTGATGAATATGCCACTT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGTTAATGCACTGTAAATGTAGGTGATATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //