Array 1 65600-64473 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLLW01000013.1 Escherichia coli strain MOD1-EC5549 MOD1-EC5549_13_length_134408_cov_80.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65599 29 100.0 32 ............................. GCATTGCTGTCTCAAATAATTAATATGGGGAA 65538 29 100.0 32 ............................. CCGCTGATCCCCAGCCTCGTAGGCGCTCTCGA 65477 29 100.0 32 ............................. CCTAGCCCGATCATCGGCATGAGCGATGCGGA 65416 29 100.0 32 ............................. TGAAATCAGAATTATTAGCGGAATTACAGCAA 65355 29 100.0 32 ............................. CGTAATGAAACCAGCAAAAATTGTTTTATTAG 65294 29 100.0 32 ............................. AACTTATTCGGTTTATTCCGTCGGCGCGCGAC 65233 29 100.0 32 ............................. CCTGCAGTTTCCGCCAACGCCAGCGGACGCAG 65172 29 100.0 32 ............................. ATAAAAAATACACTGTTTTGTGGAGCCTTACT 65111 29 100.0 32 ............................. CCTGAAAGTGGTGGCAGACACACCGGTGACCA 65050 29 100.0 32 ............................. TGCATCGCGTCACAAAATGGGCGAGTGCGGGA 64989 29 100.0 32 ............................. CTTCTCCAGTTAAATCATGCCAGCGGCTTTAC 64928 29 100.0 32 ............................. TACGTTAGCGAGGGGATCACGCAGGAAACCGC 64867 29 100.0 32 ............................. ATTTCGAAACCCCGGCAATATTCTTTAATGTG 64806 29 100.0 32 ............................. AGTGGTCCGCCGGGTTTATCGCTCGGGTTGAC 64745 29 100.0 32 ............................. ACGTTGCCAGCATGTCCGGGCGACTACTGAAC 64684 29 100.0 32 ............................. CGGGCCGTGCTGGTGGGCGGCGCAGAGCTGGA 64623 29 100.0 32 ............................. GCAGCACCACCCTGACTTTGCGGCTAAACGGA 64562 29 100.0 32 ............................. ATTAGCCCCGCCTGACCCTGCTTAATGTTCTG 64501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCAGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCATGACTACGCGCAATTGCCAGCGCTCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91935-91296 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLLW01000013.1 Escherichia coli strain MOD1-EC5549 MOD1-EC5549_13_length_134408_cov_80.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91934 29 100.0 32 ............................. AAAATTGGGACGCTAACTCATGGGTCTGGGTA 91873 29 100.0 32 ............................. GGAAAAACGCCTGTGGTTGGGGCTGAACCAGG 91812 29 100.0 32 ............................. TCGGCGCGCTCTCTGTAGAGCGGTTGTGTGAT 91751 29 100.0 32 ............................. TCGTCGGGTCCGACAGGGGTCGGTTGTTCGCC 91690 29 100.0 32 ............................. TTTTGACGATTATTCTAAAAGTGAAAATAGCA 91629 29 100.0 32 ............................. CACGCTGGAGTGACCGGGTGGCAGAGCATGAC 91568 29 100.0 32 ............................. CCATTTCATCATGAACGGCGGAAATATCGTGG 91507 29 100.0 32 ............................. GTCAGTTCCCGGTTGATATATATGATGAGCAT 91446 29 100.0 32 ............................. CGCAATGGCGCGGCGATTGCTCTCGAGATCAA 91385 29 96.6 32 .T........................... GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 91324 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTCCCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGCAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCATAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAAGTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTATCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTGAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //