Array 1 209069-207633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSPF010000007.1 Salmonella enterica strain 4 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209068 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 209007 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 208946 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 208885 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 208824 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 208763 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 208702 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 208640 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 208578 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 208517 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 208456 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 208395 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 208334 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 208273 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 208212 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 208151 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 208090 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 208028 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 207967 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 207906 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 207845 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 207784 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 207723 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 207662 29 93.1 0 A..............A............. | A [207635] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226426-225239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSPF010000007.1 Salmonella enterica strain 4 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226425 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 226364 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 226303 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 226242 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 226181 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 226120 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 226059 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 225998 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 225937 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 225876 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 225815 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 225754 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 225693 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 225632 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 225571 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 225510 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 225449 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 225388 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 225327 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 225266 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //