Array 1 65370-63405 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETN01000008.1 Salmonella enterica isolate STY113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65369 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65308 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65247 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65186 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65125 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65064 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65003 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 64941 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64880 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64819 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64758 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64697 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64636 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64575 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64514 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64453 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64392 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64331 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64270 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64209 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64148 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64086 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63983 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63922 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63861 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63800 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63739 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63678 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63617 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63556 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63495 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63434 29 96.6 0 A............................ | A [63407] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82994-81501 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETN01000008.1 Salmonella enterica isolate STY113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82993 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82932 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82871 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82810 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82749 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82688 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82627 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82566 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82505 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82444 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82383 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82322 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82261 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82200 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82139 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82078 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82016 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81955 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81894 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81833 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81772 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81711 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81650 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81589 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81528 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //