Array 1 205661-207074 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 205661 29 100.0 36 ............................. GCAGAAGAAGTCAGAAAACAGCTTCACGGGAACAGG 205726 29 100.0 39 ............................. GTATAACTGTATAGAAAATCAGGAATACGATTGCCGTTA 205794 29 100.0 37 ............................. GGGAAGCAGCCTTTATGCGGGTAACGCTGGAGGAAAC 205860 29 100.0 37 ............................. GGTTTTCATTTATTTTCAAATGATTCCTCGGCAAACC 205926 29 100.0 39 ............................. GTTAATTGAACACTTACATAAACGGTTACCCAAACCAGG 205994 29 100.0 35 ............................. GATAAATGTTGCCTGACGGAAGGGTTTTAGCGGGC 206058 29 100.0 37 ............................. GAGAAACTCCCCAAATATGAGAAAGTTGCATTGATAA 206124 29 100.0 38 ............................. GTAAAAATTCCCTCATAGAACTGACGTATTTCGTTTGA 206191 29 100.0 36 ............................. GCCGACAGATTGCGGCAGCGTTTGGCGTGAAGATGC 206256 29 100.0 36 ............................. GTGGCACAAAATGTTAATTACAGCAGGGCAATCTCA 206321 29 100.0 36 ............................. GGGCTTAAAAGGTGGTGAATAGGTTTGAATGGCAGG 206386 29 100.0 39 ............................. GGAATTTCGCAACTATCCTTGACGATATACCTGCATTGG 206454 29 100.0 38 ............................. GTTTGAATCGCGGTACAGAACAGTTTCTTTTCTGTCAT 206521 29 100.0 37 ............................. GATGATAGCATCGTCATAGTACCTTTCTGCTGTTGCG 206587 29 100.0 36 ............................. GTCTCGAATTCCTTATCCCTCGCCAGAGTTCCGGGA 206652 29 100.0 36 ............................. CTTGGTTAAATCCCTGATAATTTTACCAACTTTTGA 206717 29 100.0 35 ............................. CGGCATTGCCCGGCAACCTCGGGACTTACTTTTGC 206781 29 100.0 38 ............................. CACAGCCAAACCGGGAAACAACTTGCTCTCGGCAGGAA 206848 29 100.0 37 ............................. CGGTATCACCCCAGAAAATGAGAACGCTTCCCGGTGT 206914 29 100.0 37 ............................. CTCATTAGGCTCCATAGTCTCAAGTTCTTTCTGCATG 206980 29 100.0 37 ............................. CAGTCTTATGTAATAATATGGCTTTTCATTCTTATTT 207046 29 79.3 0 ....C....C...A......AG......G | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 99.1 37 GTTTGAAGTTTACCTATAAGGAATTGAAA # Left flank : AGTTCAGAGTGGAAGGTAAGATGTGGCATCTGAGGACTTTGTGAAATTTTACTTGGTGGAAGAAATATTAATATGATATAGAAAATTATAGAATCTAAAGAGACAGCAGAAAATGAGGCAATAGATGGGGTTGATATCAAACTGCACAAAACAGTTTTTTAACTAATAAAAAGGTAGTTTTTAAGTTAAAACGTTATTGATAGTTATCACCTCCCTTTTTAGATACAAACAATTTAGGAAAAATATTACAGAAAATATTGTGAATAAACAAAATAAAATACAGCAATATATGTATTACTGCCTAAAAGGCAGCCGTTGCAATTTGATAGAATATATGGTAATATTTATCCTAAATAAATCTGTCGATGTCCAGTAGCTTAAAAACCACCGGGGATCGACAGATCTAAAAATCGGGCAATATCAACTATTTGCGGATTTTAATACTCAAAAATTTAAAAATTGTGATTTTATAAAAACGGCTTTTTATGCGGGTTTTACGG # Right flank : GCATACTTTCTTCGTTGGCACAGTATTTTGCATGGCTGTTTTAAGTCTACATATGAAGTGGGCCCTCGCAAAGAGTTCTCTATGCACACAGCTTTGACATATCTTTAGCTACCTAATTTGCTTCTACAAATCCCTTCAGGCCTATTCCGGATGAATATATTGTTCAGGGAATTTTCAACAGCGAAGTGTTGAGGTACCTGTTAAGGGAACGGGGTTATACCGGGAGCATCACACTTATTGAGGGCTGTGTGAAGTCACACCGGCCGGTGTTGACGGATCAAGCAACTTTGTGCTATTTTTTTGAAATGGAGGTAATTTTATATGAAAAAGATAGAAAAAATACTCATTGCGTTAGCCGTCATTTTTCTATTTTCTGCCTGTGAGGGAAGAAATGCAGATAATTTTATTGGTCTGTCGGAAATTGATGACTTAAGACAGGAAACGTCAACAAAAAAAGAAGCGGAAAGTAACAGTGAAGCATGCCCTTCCAATACTCCCAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 784887-786391 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 784887 30 100.0 34 .............................. TCACCATCGCCTTTACTATACAAGTGTGTTCCTC 784951 30 100.0 36 .............................. ATTTCGGTGATGCACCCCACGAGCATAAAATGCTCG 785017 30 100.0 35 .............................. GTTAGGTTTCTTTTTAGATTCTATGATACCTTTTA 785082 30 100.0 36 .............................. TCAAAAATCTATATCACTTTTTACTATATCCCTTGT 785148 30 100.0 36 .............................. ATCGATAATGTCAATTCTACCTAAAGGGTAATAATC 785214 30 100.0 36 .............................. GTGTTTTTTAATATATTAAGTAATGTTTTATCATTT 785280 30 100.0 36 .............................. CGTTAATTAATTTTTCATTCTTCATGGTTTTAACCT 785346 30 100.0 35 .............................. TCCCCAACGCTCAGCAAGTTTAACCTCCGATGTGA 785411 30 100.0 36 .............................. TGAGCGCATCAGCGAACTCATGGAAGAAGAGCGCAG 785477 30 100.0 35 .............................. GCAGTAGTCCGTATGCTGGTAACATCCGGCCTCTC 785542 30 100.0 35 .............................. CATAAATAATTATTTAGAGGCGCCTCCTGAAAGGC 785607 30 100.0 36 .............................. TTACATGTTGCTCATACAGTGGAACAGGTACCGTAA 785673 30 100.0 33 .............................. CTTTAGCGTCAAACATTACATATATCCCTCTAC 785736 30 100.0 35 .............................. CGAACACCAGGACCACAGCAAAGCGGTGCGTGATG 785801 30 100.0 34 .............................. CCTCGACATTGGATATAGGCCCAAATTCACAAGA 785865 30 100.0 34 .............................. CCTTCTGAAAGGATAATAAAAATAGCCGTCGCAA 785929 30 100.0 35 .............................. ATGATCGTTGTGGAAAACGAATACTTCGTTTCCAC 785994 30 100.0 34 .............................. TTATTAAAAGCGTTTAATGCACCGTCTATTGTTA 786058 30 100.0 144 .............................. TATTTTCATTGTGGGAAACCTTCACATCGAAGGTATTTCATACAATTTATATTGAAAAGGATAAAACTAATGGTATAATTTAAATAAACGTTTTGTCTGTCGATGTCTAATGAGTGTTAAATTGACTTTATGAGGATTTTACGG 786232 30 83.3 35 A...GG...A.......G............ TATAGCTCTTTTAACTTTTTGACGCCCTTATTATC 786297 30 93.3 35 A...T......................... GAATATGTATAGCCCTTGTTGTTACCACACTCTTC 786362 30 76.7 0 .A......CC.T...G.G.......A.... | ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 22 30 97.9 40 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Left flank : TTTTTGCAATAATCCTTTCTATAGCTTCAGGTGAAAATACGTTCTTCTCAGGATGTTCAATAACGAGGTTCTCTATATATCTTTATTGATAATCTTCATGACGCATTCTTTTGTTCTTTTTCTATTAGAGCATTCATACGTCACGTAAAAGTTTTATTTCTACCAGTGGACAAGCTGCAGTTTCCTCGCGCCAGTATAAACCCACAAAGCCGGCATTATGACAGGAACGGCAAGGGAAAAAAGTAACTGACAGCTCTAAAATTAAATCCTTCCTGTAGCGCTACCCCGGCTTCGTTCTGGGTTATTAATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAATAAATAATTCTGTCGATCTCCGGTAGCTTAAAAACCCCCGGGGATCGACAGATGTAAAAATCGAGCAATATCAGCTATTTGCGGATTTTAATACTTAAAAACATGAAAGTTATGATTTTATAAAAGCGGCTTTTTACGAGGGTTTTACGG # Right flank : CCCGTCAAGCCGTATGTTTCCACCTGTTGTGGCGCTTTTGTCTACCTATAAGGATTTTTCTCGTCTATAACCGAACGGATGTTTGTTATAATATCTATGGGTGAATTCTATGAAAGCTCTCATGCAACCCGTAGACATGATAAGCTGCACTTTAACGAAGTGGAGAGCTCCGCAGACTGTCAGGTTCATGGCAAAAGGTAAAGACGGTAAAAAGAACGAGAGTTTGAAGTCACGTTGAGTTGAATTCATGCAAAGGAGAAATGGCTGAAAATCATCGAGCATACGGTAACGGCTGTATGCAAACGGTATATTTGATTTTTAATTTTAAGAGACGGGATTTATGTGACATGAAAACATTTTACAGTATGAGTTTGGAGACATCTGAAAAATAAAAAAATTAAAGAATAAAAGATGATTTTATCTTTTTTTGTAGAAATAAAACACTAATTGTAGAAATAAAACATTAATAATATGTGCCAAAGGGGGATACTATGGATTTA # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 789253-789736 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 789253 30 100.0 33 .............................. GATAAAACAAGCTACCCCTGAAGTACTCCATCG 789316 30 100.0 35 .............................. CAAATATTCTAAATCCAATCGCAAAAATTGATATT 789381 30 100.0 35 .............................. CGGGGAAACATTAACGTTATTAAATCAAACACAAA 789446 30 100.0 35 .............................. TAGTGAAAGCAGAAAACGCAACTTAGGCAAAACGA 789511 30 100.0 36 .............................. GAAGCCGGCACTAAATATGTTTCCCATGTGTCAAAA 789577 30 100.0 35 .............................. CGTTTTTTGACGTAGATAGGTTGCTTCGGTCGCCC 789642 30 100.0 35 .............................. GTGTTGGTATAACCCCCTCCACACAACCACATCGC 789707 30 70.0 0 .................A.A.GG..CTTTT | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 96.2 35 GTTTGAAGTTTACCTATGAGGAATTGAAAC # Left flank : AATGGTCCTTGGATTGAAAAAAGAAAAATGGGAGTGAAAGAGGAGTTGAAAGGGATGAGTAATCTCAAGCAAAAACTTACAAGCAGAAAGTTCTGGATAACCATTGCAACGGTTGTCTTTATTATCCTTTCTGAGGGATTAGGCTGAAATATTGACAATGATTTGTACTGGAAAATTGTAACAATGACGCTCGGCTATATTTTTGGTGAAGCAGCCGCCAACATTGCAAGAGCGAAGAGTACTGACAGCGCAAATGCATAAACATTATCTGTTACCTGCTTACCCCGGCTTCGGCCGGGGGTTTTTTATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAGTAAATAATTCTGTCGATGTCCGGTAACTTAAAAAACCCCGGGGATCGACAGATCTTAAAACTGAGCAATATTAGCTATTTGAGGATTTTAATGCTTAAAAACTTGAAAGTTATGATTTTATAAAAGTGGCTTTTTATCCGGTTTTTACGG # Right flank : TTACTACCTCCAAAGCATTGAGCCAATGGAGAGCTTCAGCACTTTTCAGGATAAATGAAAAAAAGTACAATGCAGTGAGAAACATGTGTAGGGTTCTATGGCCGGTTTCAGCTCTTTTTTTATAATTTAGTTAAATGCTGATGTATTTTTTTGGAACAGGAATTTTTTGTTATATTGAATTATTTCGCAGAAAGAGCTTGAACAAGCGATGAAAGACAAATGGCGGTTTGGCAATGAATAATACTGTTTTTTTAAAGAACAGAAAGATTTTTAAAACTTAAAAGAATTTGTATATTGAATTGAATATATGATATATAATGTAATTATGTATATTTAAAAGTTAAAAAGGGTGATAAAATGGCATCTGAAATATATTTAGCAGGCGGATGTTTTTGGGGAATGGAGAAATACCTCTCACTGATTAAGGGTGTTGAAGCGACGCAGGTGGGATACGCGAACGGAAAAACCCTGTTTCCCACTTATGAGGAAGTCTGCCATAA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1503143-1502849 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1503142 30 100.0 37 .............................. TGGTATTGAAAAGGACGGTATAAGTACAGACGCAATT 1503075 30 100.0 35 .............................. ATACCTCTGCTGCCTTCCTCATTTTCGGCGGTTCC 1503010 30 100.0 36 .............................. ACATAAATCTTACAGCCCAATACCACCGGGTGTTTT 1502944 30 100.0 36 .............................. GTTGTAGTCAGCTGTATGGCATTTCGTAATGGTTGG 1502878 30 90.0 0 A.....................G......C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 CTTTTAATCTAACCATAATGGAATGTAAAT # Left flank : CTTGAATACAACAGAAAAGGTCTTCTGTCTGAGGACAAGACGTATAAAAAACCTGCATTCTATGTAATGAAGGAATTTTATGCTTCTATAAAAGATTAAACGAAAGGAACAGATATACAGCTACATTATTTTAACGTAGGGCAGCATTGAAGCGTGATTTTGTGGCTTGTACCGAATTTAGAGACATGCCGGAAAAAATCAGAATGGAACATATGGCTTTTGAATCCGGGCAGGCGCTGCAGACAGGTGCCTGCCTTTTTAAATTTTACGTTTTGTCTTAAATGAATTTGCAAATTTATTTATTGTTCATTAGAATATAGATTAAGAGGAATATCTACATAAAAACATCCGTATGGCTTAAAAATCGAGTTACTTTATTGTCTGTCGATCCTGAGTAACGGAAAATATACGGGGGATCGACAGATGTATCGGACTTTGAAAAATGAATAATCTATTTAAATTGTATAATACATAAGATGTAATATTTTTTTTAATCTTAA # Right flank : CCAACTTACGGGGAGTGGAAACGAAAGAACCTCTGCCGGAGGTTCTTTTTCATTTGTCATAAAAGCTGTGGTATAAAACATGGTGTAAAGGCAGGCGTGGCAATGTGCTTGCCTTTTTTATTCCTTTTGGTGAACAGGTAATATTTTTTAGGTTTATGAATAATCTTTTTTAACCGGCCATATATAAACAATGGAAAAAACTTTGGAGAAGTTTTATGATAGTTATCCGAAGAAGGACAATAGCAATATTTTTTGTGTCTTTGGTGTTATGCCTTATGATGTTTTTAACGGTAAACGGGAAAATTATAGAAGTCAGCGCCCCGGTAAGAGAAATACCAATTTACAGTGTTGAAAACAGCGAAGGAAAGGTATCGATTACCTTTGATTGTGCATGGGGGGCTCAGGATATTCCTGAAATACTCAGAATTCTAAAGGAGAAAAACGTAAAGGCCACTTTCTTTGTTGTCGGGGAATGGGCAAGGAGAAACCCTGAAGAAACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCTAACCATAATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 5 1788666-1784474 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 1788665 30 100.0 36 .............................. TCAGAAAATTATTGGGAAACGCATTCACGCGAAAAT 1788599 30 100.0 35 .............................. ATTGCGAAAGTGACAGGACAAAAGTATTTTGACCA 1788534 30 100.0 37 .............................. CTTTCTCTAAAAGAGTTTTTGGAAAACGTAATACAAC 1788467 30 100.0 35 .............................. CAGAAGTAGACCATATAATACCGATAAGGGTTAGA 1788402 30 100.0 37 .............................. TCTTCCAGACCTTCTGTGCCTCTTCATCCAGCCATGA 1788335 30 100.0 36 .............................. GTAAATGTTTCCAGTCGGGAATGTTCCACCGGGTGC 1788269 30 100.0 35 .............................. TCAGAAAACACGGCGCATACATGACACCGGAAACA 1788204 30 100.0 37 .............................. TTTTACATAGTCCACCGGTTCCTCAAAAGGTGATAAC 1788137 30 100.0 36 .............................. GGCCCTCGTTTGTCGTATGTATAGCGCTCAGCACTG 1788071 30 100.0 36 .............................. CTATCATGAAACATTACATCTATGTTTGGAGCTATT 1788005 30 100.0 35 .............................. ATGCCGAATATGAGGCACTCGTGGCGAAACTCGGC 1787940 30 100.0 37 .............................. ATGCTTCCTGTTTGGTCATGTCATGCCTTCCTCCTTC 1787873 30 100.0 36 .............................. ATAAAACCGGCAAGGTTGTAATGCATATCAGCTCAC 1787807 30 100.0 35 .............................. TTTCAAAAATTTGACCTCGGATGTGTGTTTGGGTG 1787742 30 100.0 35 .............................. TAAACTCCTTACGCGGTACGGCTAAGGCTTTCCAT 1787677 30 100.0 36 .............................. AAAAGTTGCAAAGAAAAAACAAGAAAAAGTTGAAGC 1787611 30 100.0 37 .............................. TCAGCTTTAGCTATCACAAGCTGCAGTGCAGGGTTGC 1787544 30 100.0 36 .............................. GTAGATTATGTAAGATGGGTAAAGGCAGAAAAAGTA 1787478 30 100.0 35 .............................. TTTTGCAGATAGTAAACCGGGCGAACAAGCGCAGG 1787413 30 100.0 36 .............................. ACAATGTGAGTATTCCAGTCAGCATCGTTCATAATG 1787347 30 100.0 36 .............................. TCACTCAGCCAGTCGATGTCTTGAGCCTCCTGCTCC 1787281 30 100.0 37 .............................. ATGATAGAAACATATTTCGTCATGATACGAACGCTTG 1787214 30 100.0 36 .............................. TTTTTTTGATGAAATGGTTACGAATGCAACCAAATC 1787148 30 100.0 35 .............................. TACAATGCAACTCATTTTATGTTAGAAAGAGCTGC 1787083 30 100.0 35 .............................. TCGATTCTTTTCGATGGCGAGGAAACGGCAAGTGG 1787018 30 100.0 39 .............................. CTTGTTTTTATGCGGGTAAATTGAAAACCGCTGTCATCC 1786949 30 100.0 36 .............................. GATATAAAGTGCTGACGCCGATATGAACCCGACAAG 1786883 30 100.0 35 .............................. TGTTTTGGTACTTTTCGATGCAAGCCTCAAGCACA 1786818 30 100.0 34 .............................. CGCCAAATGGCTGATGAACAAAGCCACCTTCTAC 1786754 30 100.0 36 .............................. CCTGGCGCTCGGCCTCCGCCTGCGCCTCGAAGTAGC 1786688 30 100.0 35 .............................. TGAAGGGGTGTAGGGTACGTAACAAAGCACCAGTC 1786623 30 100.0 36 .............................. ACAGCTGCAACGCCCCATGCAAAGGCGTTTGATTCA 1786557 30 100.0 38 .............................. TCAGGAATAGGATTCAGAACCCGTTCCTCAAAAACAGC 1786489 30 100.0 37 .............................. TTCGCTGGCCTCGTCGTATTCATTGTAGGTTCTTACC 1786422 30 100.0 37 .............................. TGTACTCCAGCAAAAATAAAAAGCAGGGCATAAAAGA 1786355 30 100.0 35 .............................. TAACCGTCTATGTTAAGGCCCATTTCGGCTGGAAC 1786290 30 100.0 35 .............................. GTTTTAATTATGATTATGTGTTTTCTTTACTTATA 1786225 30 100.0 36 .............................. CAAGATTTTTGTTCAGGGTAGAAAAAGACCTGATCA 1786159 30 100.0 36 .............................. TATCTTTGACCCATCTTTCCCATATACCCTTATAAT 1786093 30 100.0 35 .............................. ATGGTAAATCCATAGGGATATTACCTGCATCAGTC 1786028 30 100.0 36 .............................. TACCGAGGTAATTGACGCTGTGTTTGGGAAGATACC 1785962 30 100.0 36 .............................. ATTCTTGTGGCTAATTTAGGGGATAGAATAGCAATA 1785896 30 100.0 36 .............................. TTAGGGTACGTAACGAAACACCATTTTGCGTTCTTC 1785830 30 100.0 34 .............................. CCTGTACCGCCTTTATCTGAGATGCACCCTACAA 1785766 30 100.0 34 .............................. ATATAATAGAGGGTGTCAGCAAGGCTGGAAAAGC 1785702 30 100.0 39 .............................. GAGCTCAACTGGTCAGAATGAATCAAAGGGGCCTGCGTT 1785633 30 100.0 36 .............................. ACTCATTGTCTTCCCGGATCACGGTATAAAGGCATA 1785567 30 100.0 35 .............................. TCCTTCTTTTTTTCTTTTCTTCAACCTCAATTCCT 1785502 30 100.0 35 .............................. CTGGACAGCACGAGGATGGAGATATGGGTTGACGA 1785437 30 100.0 36 .............................. GTAGGTGATAGATTTTATAACATCCAAACAGGTTGG 1785371 30 100.0 35 .............................. TGATTTAAAGTATGAGCATGGAGATGAATACTATA 1785306 30 100.0 37 .............................. TTAGTATCTTTGTAAAAATCGGCCAGAACCGTTCCAC 1785239 30 100.0 36 .............................. TACATCTCCCAGGAGTTTAATTTCAGACTTAAAAAA 1785173 30 100.0 35 .............................. TTAAGTCAGCTCATATTGCAGATGCGGCAATTCAG 1785108 30 100.0 54 .............................. GGTATAGCATACATTCACTACATAATATTAATTATGTAAGGAATAATAGAGTAA 1785024 30 100.0 36 .............................. TTTTTAGTATTTTGAAAGGGGTAGGGGGGGGAAACT 1784958 30 100.0 35 .............................. CGGAAGAAGTGAAAAAACAGCTTCATGGGAATAGG 1784893 30 100.0 36 .............................. AATTGCATTTTAGGGAAGAGTATCGCGCGGTATTTC 1784827 30 100.0 35 .............................. CCTGTACCGCCTTTATCTGAAAAGCTCCCTACGAG 1784762 30 100.0 35 .............................. ATTATCATTCTTTATTTTTTCCTCTTCATCGCCGG 1784697 30 100.0 34 .............................. CTTAATGGGCCTTGGGAGTGGGTCTCGGGCCTTA 1784633 30 100.0 35 .............................. AAGCTGAAGAAGCTATTAAGGCAGCCGGGTTACAT 1784568 30 96.7 35 ......................G....... TCTTTGGTGGGATTAAGCTTAAAAATTCTAATTAA 1784503 29 80.0 0 ..........TC.....G...T.-.....A | G [1784487] ========== ====== ====== ====== ============================== ====================================================== ================== 64 30 99.6 36 CTTTGAATCTAACCATATTGGAATGTAAAT # Left flank : TTCAAAGAATGTAAAAAATACCTTGTACATGTTCAAAATTCAGTATTTGAGGGTGAATTATCGGAATCTCAGCTTTTTAAATTGGAAATGTCTTTAAAAAAACTTTTGAGAAAAGACAAAGATTCATTAATTGTATTCAAAACCAGGAACGAGAAATGGCTGGATAAAGAGTTTTGGGGAAAAGAAGATAATGCAACTTCAAATTTCTTATGACTTTTGTTTTTTCTCGTGAGAAAATGAGAAGTCTTAATGGCATCTACAGCAAAACTCGTGAGGATACCACCGTAGTTCTGAGTTTGACGAAGAAATAATTTCAGACTTGATCTGTCGATCATGAGTAGCATAAAATATATAGGGGATCGACAGACGTATCGGACTTTGAAAAATGAATAATTTTAAAAAATTTATATAGCTGTATGTAATACATATTTTTTTAACCTTATATCATAGACAGAAACTGTACTTAAAAGATATGAAATTCAAGTATTATAATTAATCGC # Right flank : CATTTCGTTTTTAAGCCTCCCAAAGAACCCTTCACAAGCGGAATTATCTGCAGTACACCCTTTTTTGGACATTGACCTGATAAATCCTGCATCTTCCATCCTGGAAATCCAACCAGGCCATCTGTAGTGGCTACCCTCAGAGTGTACGATTGGATGCTCTGTATCTGAAAGACTGCTTATGGCTCCATCCAACATCGTATTGACTATCTCTGCATCCGGGCTGGTTCCTATTGCCCAGCAACGGCAGCTGCAGTCTCGTTTGTACAACTCTACTGCTTTCATTCTGTCCTCATATGAATACACATGGGGGCTCCTGCTCTATTTTAAGTCCAGGTTTTTGTCCGCACCCCCTTTGGGTAAAAATATTCCAGCGTTGACATTTGTTACACATTTTTCTACGTATTTAAGACTATAACGTAAATTCTCTGCAGGGTAGGGTAAATTACTGAACGTACATACTTTGAATTTAACCATAATGGAACTGTTTATGCCAATATTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 2316087-2315859 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2316086 30 100.0 35 .............................. CAGATCAACAGCTGTTTTGGCTTCTTCTTTTGATA 2316021 30 100.0 37 .............................. TTCACCGCGTGAAAACACGTATTTTAATTCCGCAACT 2315954 30 96.7 36 ....G......................... ATTACAACTTCATAAATATTCCTGTTATCAACTGAC 2315888 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 36 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Left flank : TCCTCATCATTTGCTGGAACCGGCTTGTAGTAAAGGCTTGTACGATTTATGCTCAACAGTTCGGCTTGCTTGGTTATACTGAGTTTCTTCTCTTCTCTGTCAATCATCTTCATGCGGTCTTCACGGGACTTAGAGTCGGCCAGATTTTTTTTTAAGCCAGTTAACCTCATATGAGAGTTGACCAATTTGCTTAAGCAGTTCGTCCTTCTCCTTTTCATACGCCTGCTTGACTTTCTCTACTTCATCGGTTTCCTTGCTGAATACCCTGCCTGCATTGCTTATGAATTCTGCCTTCCAGCGGCTTAGCTGATTCGGATGTATTTCATATTCGGCAGCAATCTCATTCAGCGTTTTTTCTTCCCTTAAGACCTCAATCACTATTTTTGCTTTTTCTTCCGGTGTAAAATTTCTTCTCTTTTCCATAGTTCCATACTAACTTATTTTGGCCGTTTTGTCTGTCTTAATTTCTGGTATCATTATATCCCGGCTTCCAATCTGAG # Right flank : ATAAATTACTGTCGATTTTATTTTCAAGCCATTCTGTGTAGTTATGAAGAAGTCGCGTACCGTAAATAATAGCGAATATGATTATTCTTTTGAGGTTTGTCGGAGCCTTTATTTATTCTTGAAAACAATAAAAGTAGTAGTATAATTTACATAAAAGGTTTATAATTAATCTGTCGACGTCCGGCAGTGTAAAAATCCCTGAGGAGCGCCAGATGTAAAAATTGAGAATTATCAGCTCTTTGCGGATTTTAATGAATAGCTGCGGGTTTTTAAAAAGGTTTTTTTGTGCGTATTTCACTGGTTTGAAGTTTAGCTGGGAAGGGATTAGAGAAATTTACCTACAAGGAATTGTAATATCCGTGGCATATTCATTGTTACTACTCCTATACTGTTTAAAGCCTACCTATAAGGAATTGAAACAAGGCAAAATCGCTGCCGCCCTCAAACGTAATATACTGTCTTAAGCTTAACTATAAGGAATTGAAACTTTCGTTTGTACA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 7 2318521-2317569 **** Predicted by CRISPRDetect 2.4 *** >NC_020887.2 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2318520 30 100.0 36 .............................. AAATTATATCACAGATGGACAAGCTTGAAAACGAAG 2318454 30 100.0 37 .............................. TATTTTATTGCGCCTTCTTCAAGTGATGCGACTTTTT 2318387 30 100.0 36 .............................. ATTTTTATGCTATACTATACAATATATTGCTTAATG 2318321 30 100.0 36 .............................. AAAATTTGTAAACGTACCCGGTATAGCATACATTCA 2318255 30 100.0 35 .............................. TTTTATTTGTGAGGTGATTATATGAGTGCTACTGC 2318190 30 100.0 35 .............................. AACTCCAAAGGTTCATTGCACCGTCACCATACTTA 2318125 30 100.0 36 .............................. TTGGAGATTTCAAACTCCCGAAGAAATAGACTTTGT 2318059 30 100.0 36 .............................. TTTGACAAGGCAAAGGTGATTGTGGCGCTGGATACC 2317993 30 100.0 36 .............................. GATTCTCGGGCGTTTAGGTATGCCTCATACGGCATC 2317927 30 100.0 35 .............................. GTGGTAAATCCATAGGAATATTACCTGCATCAGTC 2317862 30 100.0 36 .............................. CCTTTATCTGAGATGTACCCTACGAGCATAAAATGC 2317796 30 100.0 36 .............................. TTCTAAGCGGTCATGATAATGACCGCCGTCCACTCT 2317730 30 100.0 37 .............................. CAGTTGTTGCATTCTAAACGCACTTCATAATCGTATC 2317663 30 100.0 35 .............................. GAGTAAATGAATGAAAGCTGCACAAATGATGGTTG 2317598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 GTTTGAAGTTTACCTATAAGGAATTGAAAC # Left flank : ATAATTTCAATTTATTTTTGAGTAAACAGCTTAGCGTTATTAATTGCTCTTAGCTATATTTTTACTAAAATTAATTATATGCACGCTTTCGAGTATTTTGCAATAAATATGCAGAATTCCGGATACGGTTTTAACCCACAGAATAAGACCATCTTGTAAAACGGGTATGTTTTAACATGCGTCATAAGTTTATTATACATGTGTATTATTAATGATTCCGAGCATTGGTATACTGGACAGGCTATTGCAAAGGATGAAGTAACTAAATCCTCCCTGTTGCGCTACTCTCAGCTCCAGCCGGGGTTTTTTATTTAGTTTGCAAATTGATAAAATATATGGTAATATTTATCATAAATAATCTGTCGATGTCCAGTAGCTCAAAAATACCCGGGGATCGACAGATCTAAAAATTGAGCAATATCAGCTATTTGCGGATTTTAATGCTTGAAAATTTAAAAATTGTGATTTTATAAAAGTGGCTTTTTATGCGGGTTTTACGG # Right flank : GTGAAGAAGAATTCTATAATGCCCCCACTTGTCAAGACAATTTTTTAGCTTTTCTAAGTTAGGTTCTCCTTTCTTTATTTTTGTATAATTATAACATTTATGCATTCTGTTGGAGGATGTCAAGGGCGAGCGTAAGCGAGTTCATCTTGGCCCTTGACATCCAATGCGCATACATCCTTTTGCTTTCCGGTCTGTTATGACAGACCGGCTGCCTTCCGGCGAGGACGGGGTTTGGGGCAGAGCCCCAAGGTTTTATACGACTGCCGGAAGCTGCTTACAACCCCCGAAGTAATACTCTGCCGGTGTTTTGTAATCCAACGACTGGTGAGGTCTCCGGTTGTTATAATACTCCACATATTCCCTTGTAATCTGCCGGAGCTGATGTCCTGTTTCGCAATCTTCAAGATAAAGCTTTTCCCATTTGTAGGATCGGAAGAAACGCTCTATCCGTTGGTTATCCAATGCTCTTCCTTTGCCATCCATAGATATTTTGATATTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //