Array 1 4512779-4513080 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066339.1 Alicyclobacillus sp. SO9 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   4512779	    32	  78.1	    35	AATCACA.........................	ACCTTCATGATTACACCTCCCTAAATAGGGGTGAC  	
   4512846	    32	 100.0	    37	................................	TTGAATATTTTCTATAATTACGTGTAGAATTGGTCCA	
   4512915	    32	  96.9	    37	...............T................	AGCACATGCAAGAAACCCAGCACCACATGTTAAAAGC	
   4512984	    32	 100.0	    33	................................	TGGACTCTCGTATACTGTTCACCGGCCCCCGCT    	
   4513049	    32	  93.8	     0	.......A..........A.............	|                                    	
==========	======	======	======	================================	=====================================	==================
         5	    32	  93.8	    36	GTCGCTCCCCACGCGGGAGCGTGGATTGAAAT	                                     	       

# Left flank :   TCCCTTCAAACCGATAACCAAACATCTTACCAGCAGGGGAAATAAACAAATTTGTATGCCCTGTCGTAAAGTTCCATCCAACACTTTGAGCTAAATTCTGAAGAGCAGGACCGTCATCCTTAGTTATCATGTCGATTGCAAAATCTTGATACATTGCTCTGACTCCTTCCTACAGCAGAAGTTTTACTATATTTATCCACAAGAAAGTATAGCAACTTTGTCGGTAAACTGCCCGTTAGCTACATTTCCATTTTATAGAACGAACGAATAAATATCCATATTTAAACACAAAATCTCTACCTGTACTCACTAGAGACTCGCGACACTCAATTAAGTCATACAAAAGAAACCCCAGGGCACAGGATTGTACCATGGGGTCAAAGAGTTACCAACTTTATTGTTCGTGATCATATACATTTTTCTGTATCTAAATTCATTCGTCTCACTAACTCTGCGAAAAGGTCTCACCCTATTTGCGAAACATCTCACTAATTATGCAA
# Right flank :  TTCGTGATTGGATGTACAGCAATTGGCGGATCGGCGTGTCGCTCCCCACACGGGAGCGTCTGTATCCATCAAAACAGTCTCAGCATGGCACAATGATCTGCTCCCTTAAGAGAGAACCTATAGACCAACTTCTTGCTATAGTCTTCTACAAATTTCTTACTAGACAATCACTATAAACTACTTGGCTTATGTATTACGTGCACGAATGCCCTAAACAAAATTCACTAGAAAGAGCATTGCTTTATTACCTGAGACCATAATTACTTCTTTGTGTTACAGATAGAATCTTGATGTAACAATACAGTGTTTTACGGTAAGTTGCAGCAACCATAGTGTGCTTTCATGCACATAGAAGAACCCTAAGTACTGAGGATGTACCTAGGGTCACAAACCATTGTTCTTCTTATGCATTTTTCTGTATCTAAATTCATTTGTCTCACTAATTCCGCGAAAACGTCTCACCTTATTTGCGAAAAATCTCAATAATTATGCGAAATCAC

# Questionable array : NO	 Score: 8.67
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCACGCGGGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [6,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.50,-0.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.42,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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