Array 1 90275-91624 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHSQC010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_14-135 tig00000001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     90275	    32	 100.0	    34	................................	AACACCATTTTTAGCGTGATACCGCAAAAGGTAC 	
     90341	    32	 100.0	    34	................................	ATAGTAATCTTTAAAGTCGGAGTGTTGGCTATCT 	
     90407	    32	 100.0	    35	................................	AAGACAACGATTTGCTATTCATCAAGGTATCTAGC	
     90474	    32	 100.0	    34	................................	AGCTGATTGCTGATGGCTTCGATGAGGTTAAAAA 	
     90540	    32	 100.0	    34	................................	TCCTGCTCTTTTACCTCTAATTCTCTGTTCTGCA 	
     90606	    32	 100.0	    33	................................	ATAATATTAGATTAAGCCAATGATCAGAGTAAC  	
     90671	    32	 100.0	    33	................................	ATATTTACAGCGGAATGCTATTCCAGTTGTCAA  	
     90736	    32	 100.0	    33	................................	TGTTAGATCATCAATTATTCCCTCAAGGTGGAT  	
     90801	    32	  90.6	    35	.........CA.A...................	TTGGTATAAAAATGGTGGTATCATGATGACTCCAA	
     90868	    32	  90.6	    33	.........CA.A...................	ATCCAAGTTTTGCTCAAGCATTATTGAAGAAGA  	
     90933	    32	  90.6	    33	.........CA.A...................	CATGTCTATGACGAGTTCTCCTTGGACATTCTC  	
     90998	    32	 100.0	    35	................................	CCTGTGGTGATGTAGTTGCGATTGAACGGGTGAAA	
     91065	    32	 100.0	    34	................................	AATACCAACAGCAACCCCCATTGGCAAGAAACGC 	
     91131	    32	 100.0	    34	................................	ATCTCCAGTTAGCACCTTGTAAATCGGGTCTATG 	
     91197	    32	  90.6	    34	.........CA.A...................	TACTTGCTCCTTGTTTAGATGAGCAATAACTTTT 	
     91263	    32	  90.6	    35	.........CA.A...................	TGGTTCAGGCTTTAGAACAAAGCGAGAAGCTATGA	
     91330	    32	  90.6	    34	.........CA.A...................	GTAACCCGCCCTTGCTCTGTTACTTAAATGATTT 	
     91396	    32	  90.6	    33	.........CA.A...................	AGCATAGCCCCACTTAAACATGTTCTCGAAGTC  	
     91461	    32	  84.4	    33	........T..CAT.......C..........	AGGCATGGGAGTTGATAAAGATGGTGCTTATGG  	
     91526	    32	  87.5	    34	........T..CAT..................	TTTTGATAAACCAAATGATAACGTTTTGCACCAA 	
     91592	    32	  87.5	     0	........T..CAT..................	|                                  	T [91622]
==========	======	======	======	================================	===================================	==================
        21	    32	  94.9	    34	GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT	                                   	       

# Left flank :   TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAACCAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAATAAAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCA
# Right flank :  TGCGATACGTGACTTTACGATGTTGCGACTCCGTCTCGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATTATATCGTATTCATCAAGCTGATTTAAGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG

# Questionable array : NO	 Score: 8.86
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT
# Alternate repeat :   GTCTCGCCCCATACGGGCGAGTGGATTGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [5,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-7.10,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : NA
//