Array 1 2059602-2060482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072029.1 Akkermansia muciniphila strain Akk1713 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2059602 31 100.0 34 ............................... ACATTACGATTGACCCGGCGGGCCGCCCGACTTT 2059667 31 100.0 34 ............................... TCCGCAGGCTTATGATGAGTTTGATAATTGGGAA 2059732 31 100.0 35 ............................... CGACTCCGACCGTTCCCAGCTCCGAGTCGCAAATC 2059798 31 100.0 34 ............................... TTATTTGTGGGTGTGAAACCTGTAAACTGGTATG 2059863 31 100.0 34 ............................... ATTAGCAAAAAAAATAAAAAACGAACTCGCAATT 2059928 31 100.0 34 ............................... AACGCCGCTCAGGTGGATCTGATGGGAGCCATGG 2059993 31 100.0 34 ............................... CGAGGATAACGGCGGCGGCTGGAAGCCCTGGGAA 2060058 31 100.0 35 ............................... TCTGTTACAAGGAATTGAAATGGGCCATGCAGCGG 2060124 31 100.0 35 ............................... TACCCCTACGGACCAGCATGAGCCAATCCATAAAC 2060190 31 100.0 34 ............................... TTTGCTGATATTCATGGTTTATTGTTTGGTGAAG 2060255 31 100.0 34 ............................... CCCTCGTATGACGACATGCTTGAAAGCCCCTCCT 2060320 31 100.0 34 ............................... TTCATGGGGCAAACCTGCTGGACGATGATGTGAG 2060385 31 100.0 36 ............................... TGTTGGTAAATAACCTTGGCAATCGTCCACGGAACA 2060452 31 90.3 0 ........................C....GT | ========== ====== ====== ====== =============================== ==================================== ================== 14 31 99.3 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGATGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTCTTATTAAGGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGTTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAGTATTTTGACGGAGAAAGTTGGCTTTTAGGATGATATGGGAAAAATGACGGAAATTATTATTGGACGAATATGAAAACAAATACAAAAAGATATTATATGGTTTCCGGATTATGTTTGTGCCTGTTCATGGGGATATTTTCTTGTATTCCGGAAGCTCCGGAGCATAAGACGGAAGAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGTCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCGCCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2483356-2483587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072029.1 Akkermansia muciniphila strain Akk1713 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 2483356 34 100.0 32 .................................. ATCACCTCCGCCTATGTGTCCAACCTGTCCAG 2483422 34 100.0 32 .................................. ATAGCTTCCGGCCGCTTCCGGCATGGGTGACT 2483488 34 100.0 32 .................................. ATCAATTAATTTTCTTTCATCATTAATGTCTT 2483554 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 4 34 100.0 32 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACA # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGTATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : ACATAGATAATGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 2554698-2552250 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072029.1 Akkermansia muciniphila strain Akk1713 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2554697 33 100.0 34 ................................. TGCGCTTCTTGCAGGGTCGCCCCGGACTGGACGG 2554630 33 100.0 34 ................................. AAACCCGTCCAGCGGGCCCTGGGGCTGAAAACGG 2554563 33 100.0 34 ................................. AGTTTTATACCGGAAGGACGACGCGGGGGCCTGG 2554496 33 100.0 34 ................................. ACAAAATGAAAAGAATTAAAGATGTATATGGATG 2554429 33 100.0 35 ................................. TACCCCTACGGACCAGCATAATCAGACAACATCAT 2554361 33 100.0 34 ................................. CGGTTGACGGGTATCTGCTCGGAGTCGGAAAAGA 2554294 33 100.0 34 ................................. CTGGAAGACGCCGCAGGCTTCCGTGAAGCGCTCG 2554227 33 100.0 34 ................................. TAGGCGCTCAAATGTTGCTTTGCACCTTTTCCTG 2554160 33 100.0 34 ................................. CCGTACCACCCCAGCACGGGAAGTCCTCCCTGAT 2554093 33 100.0 35 ................................. CTTACGATAAAAATCCGCGCCGCAATGATGAAGCG 2554025 33 100.0 34 ................................. TTTCATGGGCCGGTTTAATGAAGACGTGAACACC 2553958 33 100.0 35 ................................. AATGGAAATGTCTCCGATTCAAATCGCCCGCCGCT 2553890 33 100.0 34 ................................. TTACGTTGTCGATGACAACATGCAGGAGCGAAAC 2553823 33 100.0 34 ................................. ATAAAATGAAAAGAATTAAAGATGTATATGGATG 2553756 33 100.0 35 ................................. TACCTACAACGGGACGGAAGTCTTTCCGAGGAAAA 2553688 33 100.0 35 ................................. CGTCAGCCACGGAAACCGAAATGACCGCCCCGGCG 2553620 33 100.0 34 ................................. TGTTGCATGGACTCCACGAGCGAACACACCGTCA 2553553 33 100.0 34 ................................. CTGATTACAGAGTTTTTCAACGTCCTTTTCTTGG 2553486 33 100.0 34 ................................. CACAACCTGGACACGGTCCGCCGCGTCCTGGACG 2553419 33 100.0 33 ................................. CGCCCATAAATGCCCGTAAGGGTCAAATTCAGA 2553353 33 100.0 35 ................................. TGATGGGAAGAACTTTTCTCAGCGCATTTGGGGAA 2553285 33 100.0 34 ................................. GAACATGACAAAAGGGCATTTGGAAGACAACATG 2553218 33 100.0 31 ................................. AGCAGAAAGGAAAATAAAACATGTGTGAGAG 2553154 33 100.0 35 ................................. CTGTTTGACTGGCTGGACGGACGGAAAAACAAGAA 2553086 33 100.0 33 ................................. CAGAAGGGTGATAAGGTGAGGTACGTGCCAACG 2553020 33 100.0 34 ................................. CTGGAAGTCCTGGCTCCGACAATGACCCTGCAGG 2552953 33 100.0 34 ................................. CATGGAGGTGGCGTCCGCCGCGCCATCGTAGTAG 2552886 33 100.0 34 ................................. CTCTCAAGCAACTCCTGTACGCCTCCGGGATAGC 2552819 33 100.0 34 ................................. CAGTATCGCCGCTTGCTCGTCAGTGATATACTGC 2552752 33 100.0 34 ................................. ATGACGTTCACGGAAGTGAAAGGTGAAGAGGTGG 2552685 33 100.0 33 ................................. AAAGAACAAACGCGCGGAAAAACTTTCAGGATC 2552619 33 100.0 35 ................................. GTGAAGTTTTCATGGCTGGAACAGGGCGCAGAGCT 2552551 33 100.0 34 ................................. GAGCGGCACGGCTACACCGGGCAAACCATGCAGG 2552484 33 100.0 34 ................................. CATCAATCCTGCCAGAGCGCCCGTGACGACTTCA 2552417 33 100.0 35 ................................. GCGGAAGCCCTGCCGGAACAACAATTCCCGGAAGA 2552349 33 97.0 34 ...........T..................... ACCCGGTCAAACACATAACAGCAGGCATGGGCCT 2552282 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 37 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCAGCAGGTCGGCGATTGGTGTAATGCATTGGGAGTAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGGGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACACGGGCCAGCCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2564567-2563169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072029.1 Akkermansia muciniphila strain Akk1713 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2564566 31 100.0 34 ............................... AAGGACGGCATGGCGGACGCGGAACACACGGACG 2564501 31 100.0 34 ............................... ATTTTTTCTGAAATAAAGAATTTCATTTTTCCCG 2564436 31 100.0 34 ............................... ACGCTGTAGAGCCAAGTCCTTTCTTTGTAAGAGA 2564371 31 100.0 34 ............................... CAGCCATGAATAATAAACTTACAAAAAATAGTGA 2564306 31 100.0 34 ............................... GACGTGATTAGCCCCTACACCTACAAAGAACCGC 2564241 31 100.0 33 ............................... GCGGAACGGTCGGATGGCAGGCTGATACGCAAA 2564177 31 100.0 33 ............................... CGGAATGCGGCTTGGGTATGTGAAAAGATGGGA 2564113 31 100.0 34 ............................... TGGTCTGGTCCTGAGTGACCGGGCCGTAGATATG 2564048 31 100.0 34 ............................... TGGTTGTGGATTTTGACCTGCCGACAAAAACCGA 2563983 31 100.0 33 ............................... AGGGTCTGCGTCAACTTGAGCACCGGGGTGTTG 2563919 31 100.0 38 ............................... CGGAAACATCACGCTGGACCTTCCCATGGAGCTGGACC 2563850 31 100.0 35 ............................... TTCTTTTTGCTCAAGTTCCCAGGGCCATTTAATAA 2563784 31 100.0 35 ............................... GACGCGATTAGCCCCTACACCTACAAACAACCGCA 2563718 31 100.0 34 ............................... CGCCTCTATTTTGTCCAGGCGGCCTTCCAGCTCG 2563653 31 100.0 34 ............................... GTGTTCTTCCGCCGGGCAGTCTCCGGCCAAGGCG 2563588 31 100.0 34 ............................... AAGTGCCTAGTCTTGATGCAGAAAGCTACGTCGG 2563523 31 100.0 34 ............................... CTGCGTAACAGTGAAGACCTCGCCTTGAGGTCCC 2563458 31 100.0 34 ............................... CTATAAAGGCGGCCTGACGGCAAAAATCAGTCAT 2563393 31 100.0 34 ............................... ATGGTCTTGGTGGTCGTACTCGTGGGCGTACCTC 2563328 31 100.0 33 ............................... TGGCGGGCGAGCAGTACGCTTGCGGGGTAGGGT 2563264 31 100.0 34 ............................... TGAACGTTCAACCCTTTTGGGTTATGGATTAAAA 2563199 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ====================================== ================== 22 31 99.6 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCAGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //