Array 1 27484-28641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADICI010000022.1 Staphylococcus haemolyticus strain GDY8P80P 80P_FDSW202387825-1r_1.clean_(paired)_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27484 36 100.0 30 .................................... AATTCAATCGTTTATACACAAAAAGTGACC 27550 36 100.0 30 .................................... ATTGCCGGCTCTAAGTAGCCACGTTCTGCA 27616 36 100.0 30 .................................... AGCGAATGCTAAAAGCATAACTACTTCAAA 27682 36 100.0 30 .................................... TGAAACGTAAGCATAAATTATTTAGAAAAG 27748 36 100.0 31 .................................... ATTTGGTCAAAGTCTGTAAAATCACCCGCTT 27815 36 100.0 30 .................................... GTTTACTTAAACAAAGACAACAAGCTATCG 27881 36 100.0 30 .................................... ATGAGGTTGAAGGATATTACAAAGAATTAG 27947 36 100.0 29 .................................... CGTTAGTTGCAGGTATCATCTACCTGTGG 28012 36 100.0 30 .................................... GGTTATCCCATTCAATTACTGCGATTGGTC 28078 36 100.0 30 .................................... AGAAACAGAATGGTTACCAGTACTAGACTT 28144 36 100.0 30 .................................... ATTGAAGGTGGAGAAGCTGGAACATACCTC 28210 36 100.0 30 .................................... GTGCAAACTCATTTTTTTTGATATCACTTT 28276 36 100.0 30 .................................... TTCTTCTCCAGCTTTGATTTGTCTTACCAT 28342 36 100.0 30 .................................... TTGAACTGCATAAACGCTACCAACGTTTTT 28408 36 94.4 30 ...............G..................G. ATGTGATTTACCACTAGAGCCACCTCCATA 28474 36 100.0 30 .................................... ATAAAGGTAAAGTAACAGCTGGTGCGTTTG 28540 36 100.0 30 .................................... AAATCGACAATGTAAGCTATGACGATATAC 28606 36 86.1 0 ........G......G......A...........CG | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.9 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GATGCAAACATAATTGTATTAACAGGATCATTACATTTTCTATCCGAAGAGTGGAAATACAATAACTATATAAGAGATGGTGAGCAAAAAAACACATCTGAATTTCTGGAAGAATTAGAGTGGAATGCGCCACTTAATTTTGATAAGAGGGAACTAGAAGAAAGTTTGAATCGATTCATTTTAACTTATCAAGATAAATTAGAATTAAATCCTATAATATCTAATTATCAAATAGCACAAATTATGTTATTTAGTGCTATTGACATATATGTTGGCGTTTCATATATGCAACATTGTAATCATAAATTTGAATTGAAAATTAAAAATGAATTACTGCCTAAAAGCATCAATAAATATTTAAACCAACAATCGTTGAATTAATTACTTTGCTATAATTAACATAATAATCTATTATTATCTTAGTGAATGAGTTTAGCTAACTTGTTCACTGAGATACCTTTTTATAAACTAATTCTTTTAGCGATTTTATATTGCTAGAG # Right flank : GTTACATTGATGCTACACCGCAAGATTGAAGTTTTAATACGCTAGTACTTCAGTCACAACTATTTTAAATAGCGATTATTAAGTGCTATTCCTTTCAAATGATTTGATTAAAGTGATTATCTCTATAATTACGCCGATCCATTATTCTTTTCAAATAATCCATAATATTGAGATCAATTATTTGGGGAAGAATGTAGAAATATTTAATATTAATTAAAATAGTAGTTGACTAACATGCTAAGGTGGAAATATAATAAATGTAAGGAACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGACTTTATGTCGTGTTTATCCCATTAATTTATTAATGGGATTTTTTCTTTATAATTAGACAAATCGCCAACGATGATGACTATCGTTGGCGATTATTTTTTCATACTATTGATTACACATTCTCATCTGTAATTTGGCCGAGCCAATAACTGCCGGCAAAACCGACGATTAATGTGATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //