Array 1 157907-159323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJETA010000004.1 Staphylococcus pseudintermedius isolate 18S03467-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 157907 36 100.0 30 .................................... GAAGCCCGCTCTGTTTATACGGCAGTAAAA 157973 36 100.0 30 .................................... AAGGCGGTAAGCGTTATATCGAAATTGAAC 158039 36 100.0 29 .................................... ATGAAATTCATTACACAAGCTTGAAACAA 158104 36 100.0 30 .................................... TTTAAAAATGGTTGCAAGCCTTGGAATGTC 158170 36 100.0 30 .................................... GCCAAGACTTTAGTAGAGCAGGCAAACGAT 158236 36 100.0 29 .................................... TAAATCATTAGACAATGCGTGTCGTGTTA 158301 36 100.0 30 .................................... ATATTCTGTGTTATTATCATGTGAAATTCT 158367 36 100.0 31 .................................... AAAGTATTCTAGTAGATCTTGATAAGCGTAA 158434 36 100.0 29 .................................... GAGATGACGCTTTTACAAAATCTTTGGCT 158499 36 100.0 30 .................................... CAAAACTGAATAGATACGATAGGTGTTTCG 158565 36 100.0 29 .................................... AATGCTGGCACAAAAGATGGTGGACGTGA 158630 36 97.2 30 ............................A....... TTACGAGCAGTTTTTTATTACACTCGGCCG 158696 36 97.2 29 ............................A....... TTTCTGTTTGTTAGTCTCTGTGTAGTCTA 158761 36 97.2 29 ............................A....... CAAAGCCCCAAACTTCAAATGGTGTAACT 158826 36 97.2 30 ............................A....... TACCTATATGCTGAAGTATCATACGCTCCG 158892 36 97.2 30 ............................A....... CAAAAGTTTGATGGCCACGTATGGGTTTCT 158958 36 97.2 30 ............................A....... GACAGAATTACAAAAGGAATTACGCAAACG 159024 36 97.2 29 ............................A....... TCCTCTTCATCAGTTCTGTCTGTTTATTA 159089 36 97.2 30 ............................A....... AAGGTGAAATGGTCATGAAGATTAGAAGTG 159155 36 97.2 30 ............................A....... AAATCAAATGGAAAAAGAAGTGACAGGCTC 159221 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 159287 35 86.1 0 .........T................-.CA.C.... | TT [159320] ========== ====== ====== ====== ==================================== =============================== ================== 22 36 98.1 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //