Array 1 349580-349314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053845.1 Campylobacter sp. CCUG 57310 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 349579 37 100.0 40 ..................................... TTCATATAGCAGGTTGTTGAACCTGCTTGTTTAACAAGCC 349502 37 100.0 37 ..................................... GGTTAGATATCGAACTCGATATCCTCCTCTTCATTAA 349428 37 97.3 39 ....................C................ TTAAGGTTCTGAAGTTTCTTTATATCTGTGTCAGATGAA 349352 37 94.6 0 ....................C...............A | AA [349318] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 98.0 39 ATTTGAACAAATTTGACCCGATCTAGGGGATTGAAAC # Left flank : TTTGAGCTTTGCGACAAACCAGCCATCTTTGAGACGCAAGAACTCTTTGTCTAGCTTATACCGTTCTTATGTTTTCTCTCCAAATTTAGATTTGCGAACTTTTTTAGCTTAAATTTGAGCTTTTTTGGTTAGAATCTTGCCAAATAAGTTCGCAAACCTCTATATTTTAAAATATGCTCTTCTACATTTGCGAACTTTTAGTTATGCTTAAGTTTAGGATAACGTATTTTAGAGCATTGCGAAACTTATATATCGCTTAGAGTTCGCAAACCTATAAAATTTGAAAATTTTAAAAGAGATTTGCGAACTTTTTTAAAATGACAAATACCTAAATTTAGGGGTTCTTTAACTTATCATTGTTAAATTTGCCAAGTTAGTATTTTTTAATACCTATACATTTGCGAACTTTTTTGAGATTTTTGCGAATTTTAGGTGTTTTAAAAGATGTTTTCTTAAATAAATTTGTTAGTTTTTGTTTTGCGAGAGTAGTCTTTTAGGCT # Right flank : ATTCAGTTTTCCTAAAAAAAGAGTCAAAAATTAACGTAAAGCCAAAAGATGCGGCAATAGTAGTGTTAGTTAAAGAAATATTAGTTTGCATTCAAGAGTCGTAAGACCCAGAAACCTGCATCAAAAAACAAAAAACATCAAAATGATACAAAATGGCAGCCAAAGCAAAAAAGAGTTTTAGAAAATTTCACTATATTGCGCTGGCTGCACTTTTTAATATTTTCAGAACAATTTTACGTGGTTAACTTAAAAGGCACGATATGGCTGGATTTACCGCTCGAAGAAATTATCGACTAAAGTTACATTGCTCTCTTTATCTCCGAGCTTCGAGCCATTTTCTAGCTCCCTGCCTATACTCTCACTATTTATTTTTTCTATGCATTCTGCACCTTTGCCCTTATCTAGCTTTGACTTTTCTCCTGTTGCGCCAATAAGTCCGGCAACAGCTCGGACGACTTTGTCAAATTTACCTGCAAATTTTCCAAAGGTTCGGTAAAGCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAACAAATTTGACCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1569214-1568095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053845.1 Campylobacter sp. CCUG 57310 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1569213 37 100.0 35 ..................................... CGTGGCATCTACCGAGTCCTGAAAGCCTCTAAATC 1569141 37 100.0 46 ..................................... GAAACTCTCAGTTTCCTCTCCCAGAGAAACTCTGAACTCCGGAAAA 1569058 37 100.0 45 ..................................... ATTTTGCCAAAAACCGCAGCAAGACCCATCAATACCACTTGCGCG 1568976 37 100.0 40 ..................................... AAAAAATTCTTTAGCCTCTCGTTTTCCCTCAGCGAGCACT 1568899 37 100.0 40 ..................................... ATTGTGCAACCAAGCCCTTTGGATTTAGTGTTGTAAGAAC 1568822 37 100.0 41 ..................................... TACCTTTGGTAGGTAGATTACACCTAAGTTTGGTACCTCGG 1568744 37 100.0 39 ..................................... GTCACTGCCCACAATATCGTAGGCAAGAACATGAAACAT 1568668 37 100.0 44 ..................................... GAGAGGGTTTTTTTGATTTTACCCATTTCGATCCCGGCAGCCAT 1568587 37 100.0 38 ..................................... TTTGGAATACCTGAAAACCGACTCCCATTTCGCCAGGA 1568512 37 100.0 37 ..................................... ATAGGTTAAGAGAATCTATTGATATTTCTAGTAAAAC 1568438 37 97.3 43 ................................A.... GCGAAAAATCGCTTTCTTTAGTACGGAGCCGTCGGGTTGCGGC 1568358 36 91.9 37 ......A......-C...................... TCATTTCTGAGCGTGCAATACGCTTGCAAGTATCTTA 1568285 37 100.0 40 ..................................... ACCAACTCGATTTTAGTAGAGCAAAAGCCTTGCATATTGT 1568208 37 91.9 40 ......A.......C...A.................. CTAACCGTATTGGCTACCGATGTTAAAACAGCGTTTTCGC 1568131 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 15 37 98.7 40 ATTTCGCTCGAGCTTCCCCGTTTTAGGGGATTGAAAC # Left flank : AAACCTGCTTGGCTAAAAGTGAAAGTATGGGAGAAGGCAAAATTTTTAACCCGCTTGATACTTATATCTAGCGCCATCTATCCGCAAAAGATTTTCGAACTTTTTAAAATTTCAAACCTGTGTGTTAATCGATATTTTATATTGGGTTAAGTATAAATATATTCGAAAATCAGAAATTTGATATTTTTAAAATCGAGATTTTCGTATTTTTATCTAAACTAGTTTTTGAAAAACTTCATTTCACGGCTTTTGAGCTATCTAAATTTGTTATAAATTTCGAAAAAGAACAATTTTATTAAATTTTGTTTTGGATTTTCGAACTTTTTAGAGATTGTAAATATGCTTTTTATCGATACTTTAATGTAACTATAAGCAAAATACCTCAAATTTAAAAAATATTTTTTGTCGTATTTTCGAACTTTTTAGCTCTTTGTGATATAATGCCGCTTACAAGTAGTTCTTTAAAAACTCATTGTTAATTTTAATGCGTTTTGATGGCT # Right flank : CCTCTCAACTCTAAAATTAAACCTATTCCACTACTATGTATTTTGCTCAAGCTTCCCTTTTATGGTTAGCTATTAAAAAGCAAAATAGCGACTTATTTTACTTTTTAATACTCTTTTACTTCCTCTTATGCTAAAAATTTCAAAAAAATAAAATTCAAGCTTAAAATGACAATATATGACATAAACTCTTTGTAGAATTACTTGATTTTGTTTTTTAGTTAATACTAAAAGATAGAGTCTAAATTTAATAACAAAAGAGGTGTAGTATGGATAAGATATTAGTTGCAGTAGCTATTATAGCCGGTATATTTTTTGCGGATGAGACATGTCCTATGCCTATTGAGCACTATCCTTATATGGTGGCTCAGGTTGGTCAAGATAGCGGCGAAGAAGAGCAAAATATGCTTGCTAATATGATGACTCTACTTAGTGCATCTATGGGAGTCAAAAACTCTCTGATAGAGGGTATAGAATGTGAAATTTACGGACTAACGGAACAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCGCTCGAGCTTCCCCGTTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //