Array 1 217404-217928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059175.1 Flavobacterium psychrophilum strain P7-7B/10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 217404 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 217473 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 217542 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 217611 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 217680 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 217749 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 217818 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 217887 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 95.8 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGTTAGCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATRATTGTTTTTGTTGCCTTACCTTGGTTTGTGATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGC # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAWATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1326590-1325560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059175.1 Flavobacterium psychrophilum strain P7-7B/10 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1326589 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1326514 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1326438 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1326362 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1326286 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1326210 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1326135 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326059 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325983 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325908 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325832 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325757 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325681 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATYRMWKYC 1325605 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 14 46 99.8 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CTTATAATTACCAACTTTTGTTTTCGTCAAATTCCCCATTTGTGGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACATTAATGCGCTAATTATCGAAGGTAGCACTGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAGGACGATTATAAATTTATGCTAAATATTAGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAGATATATCTAATACTAGAGCGTACGACAGGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACAAAAACAATATCGAAAAACTGAAAGAGAATGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACTATATCCGTGTTTGAATACASAWAGAGAATGTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACTATATCCGTGTTTGAATACACATTGCCACC # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //