Array 1 175651-174846 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXG02000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HIY0070 NODE_5_length_184538_cov_18.922662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 175650 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 175589 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 175528 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 175467 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 175406 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 175344 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 175241 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 175180 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 175119 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 175058 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 174997 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 174936 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 174875 29 96.6 0 A............................ | A [174848] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9657-7187 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXG02000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HIY0070 NODE_74_length_14978_cov_18.995421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9656 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 9595 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 9534 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 9473 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 9412 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 9351 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 9290 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 9229 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 9168 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 9107 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 9046 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8985 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8924 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8863 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8802 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8741 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8680 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8619 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8558 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8497 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8436 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 8375 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 8314 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8253 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 8192 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 8130 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 8069 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 8008 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7947 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7886 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7825 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7764 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7702 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7641 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7580 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7519 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7458 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7397 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7336 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7275 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7214 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //