Array 1 6617-5460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJA010000007.1 Listeria marthii strain FSL W9-0657 NODE_7_length_104022_cov_98.084352, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6616 36 100.0 30 .................................... ATTGGCCCCGGGAAAAGCGACCGTTTTCCT 6550 36 100.0 30 .................................... AACGCCCCAAAAAATGACACTGACGTTGAC 6484 36 100.0 30 .................................... TTTACTCTTCCACTGTTCGAAAGTCATTTC 6418 36 100.0 30 .................................... TAAACTATCTCCTAGTACGTTACCACCAAT 6352 36 100.0 30 .................................... CATGCATGAATTGTTAATGGCTATCACAGA 6286 36 100.0 30 .................................... CTCCTCCAAAAAATTTCAAAAAGGGAACTT 6220 36 100.0 30 .................................... TCTAGTGATTGTTAGTGGAATCGTAGGCAA 6154 36 100.0 30 .................................... CGGTGGTAGTTGCTGCTTATATGAGTGTTA 6088 36 100.0 30 .................................... AAACAGACCAAGTTCCATACTTTTTTGTGT 6022 36 100.0 30 .................................... CGAAACGACAGAAGTCGAGTTATACAACCC 5956 36 100.0 30 .................................... AGAAACTAGATCTTAGCCAACTAACATAGA 5890 36 100.0 30 .................................... TAAATAGATGTGTTTAAGTTGATGTCTCAT 5824 36 100.0 30 .................................... TCGTTAATGATGGGATCTGTTTGTGTATGT 5758 36 100.0 30 .................................... ATAAAATTGCCAACACTCTATCTTGTGCAG 5692 36 100.0 30 .................................... AATTTCGTATTGTTCCAAACTGGAATACGC 5626 36 100.0 30 .................................... AATTATCTTGGCGGGCGATAATGATGCAAA 5560 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5495 36 72.2 0 ......A..T...A......A..G..A.G...T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATGAAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 633775-632572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJA010000001.1 Listeria marthii strain FSL W9-0657 NODE_1_length_903297_cov_78.422571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 633774 29 100.0 35 ............................. ATACCGTTTCCATAACACCTTGCTCGTTTAAATCA 633710 29 100.0 35 ............................. CGGGCAATAGTCGATTTTAAAGTATAGATAATCCA 633646 29 100.0 39 ............................. CACTATTTCACTTGACTCAGAAACAAACGAACTTTTGTA 633578 29 100.0 34 ............................. CATTTTGCTGTGTTTTGTCATTACTCATCATCCC 633515 29 100.0 37 ............................. ATACTCATTTGTAAATCCAACTTTCATACCAGTTAGC 633449 29 100.0 38 ............................. TTAATCAACGGGTTTCTGATTTACAGAACGAGGTTATT 633382 29 100.0 35 ............................. AGTCTTGGAATTAGAAACCACGTTATCCGAACGCG 633318 29 100.0 37 ............................. ATATCTTAAATGAAAATCGCAGCGGTAAAAAAGTAGA 633252 29 100.0 37 ............................. TTCTGCATCGTACCCCAATTCATCAAGCGTGGTAAGG 633186 29 100.0 37 ............................. GAGGACAGCTCGTTCAGCGTTGAAGTGGACGAAGAAG 633120 29 100.0 34 ............................. TTTCAAGCCATATTAGTTGTGCTAGGGTTGTTAC 633057 29 100.0 36 ............................. TCTTGCGTGATAGCTGTACCAAACGAACCACTCACG 632992 29 100.0 36 ............................. ATACTTATTATGTTCATATACAAGAATTGATGTCCC 632927 29 100.0 36 ............................. AAGGGACGCAATGTTCTTTTAGATCTACCACGAGGC 632862 29 100.0 37 ............................. CCTACAGTTTTACTCGTATTTTGTTCGAAATCCATGT 632796 29 100.0 36 ............................. TTGATCAAAGAATCCTTGTATCTTCTAAAAGCATTA 632731 29 96.6 37 .........................G... TTGAAATCATAATTATTAAATTTAGAAATGCACTCTG 632665 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 632601 29 86.2 0 ...............C......CC....C | A [632576] ========== ====== ====== ====== ============================= ======================================= ================== 19 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATTTTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCGATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCGGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCTGCTCCCGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGCACTTTCTTATTCGCAAGCAGCTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 649725-648718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJA010000001.1 Listeria marthii strain FSL W9-0657 NODE_1_length_903297_cov_78.422571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 649724 29 100.0 35 ............................. TCTTTCATTCCATCATATCCCCACGCATCACTTCC 649660 29 100.0 35 ............................. CAGTGACTGCTGTGTGTTGTGTGTTACACGTCCTG 649596 29 100.0 36 ............................. GATGTTAATTTTTTCATCATCACTAAGTGTCTAGCC 649531 29 100.0 35 ............................. GCGATGTCCAGAAATTCCTTTCTAGTATATTCTGC 649467 29 100.0 37 ............................. GGAGATATAGTAGAAGCCGCAATGCAACAATGCAATG 649401 29 100.0 38 ............................. AAGCAACTTGGCGAATACATTTATGACAAGTGGAAACT 649334 29 100.0 37 ............................. ACGATACCACGCAAATCAACAGAATTTATTTGTACAC 649268 29 100.0 37 ............................. AAAATATATCTCAGAATAGCATCATTCGCATTTAAGC 649202 29 100.0 38 ............................. TTGGATGGCTTCTAATACCTCTGGAACTTCTTTTTTCT 649135 29 100.0 37 ............................. TTAACTGCCATAACTGGCTTTTTTTCTTTCGCTCTTC 649069 29 100.0 37 ............................. TTCTATTTAATTCCGAGAACTGGCGCAGGGTCTGTCC 649003 29 100.0 34 ............................. GCTGGTAGAAGAATATTATTAATAGATGGCGAAG 648940 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 648877 29 100.0 36 ............................. ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 648812 29 93.1 37 ..A...........A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 648746 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 98.9 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCCATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGCTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGATTCCAAATTTTCCATTCCCTACACAAAAAAGCCAACCAACATGATTTAGGCTTATTTTTTATCCTCCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //