Array 1 57727-58053 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMVG01000009.1 Pantoea sp. RIT388 9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57727 28 92.9 32 C...................T....... GACTTCATCAATACACTGAATAAGCGTATCCA 57787 28 96.4 32 ...A........................ AGTCGCCGTGACAGGAGAGGCTGTAGATGACC 57847 28 100.0 32 ............................ TCGAAAACTTCCCGCAAATCCTCCTCTCGCTG 57907 28 82.1 32 .CG........CT............C.. TTCTCACAACGAGTGGCTTTCTTTTGCCCCCG 57967 28 96.4 31 ...........A................ GCCGACAGATGCGCAGCGGGAGCAGTATGAG 58026 28 78.6 0 ..........A............TTCTG | ========== ====== ====== ====== ============================ ================================ ================== 6 28 91.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCGCTTCGCCGCCTGGAGAGACAAACACCACAGACTGGCCAATACTCAGCGGGGCAAAGACTTCGACGGGCTGATTCTCCTTCTGAATCTCCAGCAGCAGCCGCGACTCGAAGGCGCGGTCGGCTACGCTGTCAAGATGATAGTCGCAGGTAAAAGAAAATTCTGGTTGATCAAGGATGTAAAACTGTCCGGATGGCATATGCCTGACCTCTCAGTTAAGATACAGCGGGGCAGAAAGCGCCGGTATTTGACTTAGTGTAGCTATAAATCTGGCGACCGGAAGAGCAAGCCGGGGAAAGGATAAAATTAGCAGGCTAATAATATCTTTCGCAAGAAAGGATAAATCAGACAGCGGTTTTTATGAGAATATTCTTGCGCCCCTTCAAGAGCTAAGCCAACACGAGTGCCGGAGATAAGCGCCGGGTGGGGCATACAAACCCAATCAGCCGCCTTCAGGCAGCATTGAAACAGCGCCCACAGACGTTTCTTAACAGCGTCAG # Right flank : GTCGGCGGAAATGACCTGCCAGATAAGCCAGTCCATGGCGAACCACCTCCTGAGGCGCCTTACTCAGAATTACCAGGCGGACGTCGGCTCTTTTTGCCACCTTTCCGACCCGCTTCCCTGGCTCGTTCAGGATTATTCCTGAAGTTGCCTCCGCTGGCTTTGCCTCCTGCGCTGCCCGCTTCTTTTGCGCGTTCCGGATCGTGGGCAAAATTACCGGCCCCACCTCTGTACTTCTGTTGTGTCATAGACAGTACTCCTATCAGTGTTCCCGTAGATAAAAGGACTAGCTAGTCACCTTTCAAGCGTAGCCTGCTGCTGCGCCTGCGCAAGGGGATGGCAGGAAAAAATCAACGATTTCTGCTGGTTAGGTTGCGTTTCCTTGCCGCCGCGCGCAGCAGCAGCAGCAAGGGATGTTAAGCGTAAAACAGTCAGGCGGACGGCGTGCTGCTATCGCGGGATGTCTGATGGCGTTCGTGCGAAAGACGCCAGAAATTAGCGCC # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87089-86281 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMVG01000001.1 Pantoea sp. RIT388 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87088 28 100.0 32 ............................ GTATCGGCAAGACCTACGGCGCAGCACGCGAA 87028 28 100.0 32 ............................ TGAGATTAGCTACAGAATTGAATGATAATGCT 86968 28 100.0 32 ............................ CACTGGTGACGCTGCTCGTCAGTCCAGGCAGC 86908 28 100.0 32 ............................ ATTTTTCCTATATAAGGAAGAATGTCAGCATC 86848 28 100.0 32 ............................ CCGAAGGGGCGGGGCCGCCTGTGGCGGGGCAA 86788 28 100.0 32 ............................ ATACGGCCTTACAGCGCGCTCTGAAGCCTCAC 86728 28 100.0 32 ............................ TACCGCAAATACAATGCGGGTATGTCGTCCGG 86668 28 96.4 32 ....................T....... TTAACATAGACAATGTATCAGGGGACCATTAT 86608 28 96.4 32 ..T......................... CCCGCAATATCAAAACTCAGAAGACACTCTCA 86548 28 100.0 32 ............................ AGATAGCCATAAAGCGTATGGACAGCAGCGGC 86488 28 96.4 32 ..T......................... TGAGTGCTATTTTTACTGTCGTGATGATATTC 86428 28 96.4 32 ..T......................... TTCGGAAAATGGTATTTTACTGTTGCTTCAAG 86368 28 96.4 32 ..T......................... TCCGCGCCCACGGCCTTATCGAGTAAATCATG 86308 28 89.3 0 ..T.....T.......C........... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGGCCTGGCGGCTGAGATCTTCGAAGGCAGCATCACTGACCTGCCGAACCCGAAAGCGAAGAAGAAGTAAGCCTCTTTTGCTGAGAGAAAAGCTCCCGAAATGGGGGCTTTTTATTTTTCTAGCCATCAATTGGGGACGATATTTGAAGGAAAGCGGTTTCGATCAGTAATACTCTTGGATGACGTGTCCCTCCTTTTTACCCTCGCCAAAAACTTTCCTCTCCTGACTGCTTATTTCTATGACCTTATCATGCTGGCTATGGCAGGATTTTTCCTGATTAGCGCCGGGTTTTAATATGTTCGACCATTCTTTCAGGGATAAACATACCGAGGCTATGGGATTAAGGGCAACAGAGATATGACCGATTACCCTTTTTTCTGCTTTCTTTTTTAAGATATTGATTTTTATTTAATTTATTTTTGGTTGGTAAAAAAGGGTTTTTACCATCTTTGGTCAAAAAAAGGTGTTTTATGAGTGGGTTATGATATATCCGCAACT # Right flank : AAATAGGCGCATTAAAAACAACCAGGCAATATGTACAGCCGTACATACAGCTTCCAGACATAATAACCAAACGCTACCAGCCAGCTGCATACCAACTACCATTCAGATGCACTTAAACGCGGTAACGATGAGTGCCAGTCCTTCCCGGTTGTCATTTCAATAAACAGCTATCGCATCGCTCTGCTATGCCTTTACTGCTGAGTTCATTAAAAGGTCATAACCTCAGCTATTCCTTGTTCCTCACCAGGCAGCACAAAAGTTATACTCGAACTGCATAAAATTTAACTGGCGCTTCTGCTATTTCAAAAGACTTAATGCAAGGTGTCTTTCTGCCGAAGACATAGCCCAAAAGTCGCAAAACCGCACTTTTTTCCCTCGTTAATTATGTTGTGTTTTTGTAAACAGATTAACAAACAGCCTGAACCCTGCTATGCTGCCCCACGCGGAACCGGGCACCTTACCCTACTCATGGAATGCTTAGCATCAGGGTGCACCGGAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //