Array 1 1141928-1140825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032339.1 Azospirillum brasilense strain MTCC4038 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1141927 32 100.0 37 ................................ CATCCCCTCTCAGTACAAGATCGTCCAGCTCACGGCC 1141858 32 100.0 35 ................................ AGGAAGGTGTGCACGCTCGCCCCAACGCACGTCAC 1141791 32 100.0 34 ................................ TGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCG 1141725 32 100.0 34 ................................ TGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCG 1141659 32 100.0 35 ................................ TGGCGCTCGGTCGATCCATGGCGGTAGACCCGCAT 1141592 32 100.0 35 ................................ TTGCGGCAAATGTCAGCGAGCTTCGTCATGGGCGC 1141525 32 100.0 36 ................................ GCTAACCACTATCGAAACTCTAGCTTCACGGCGGTC 1141457 32 100.0 34 ................................ ACAAGTCCGGCCTCATGAAGTCCTGGGGCGGCCT 1141391 32 100.0 35 ................................ CCTCCTCATCTGGCCCCTCAGGCGAGGATGGCGCG 1141324 32 100.0 36 ................................ ACGATCCTGTGGGGGCGGGAGTGGCCGCGGAGTTTC 1141256 32 100.0 34 ................................ ACGCTCCAGGCCGGGGACAGCCTGGGCACCGGAC 1141190 32 100.0 34 ................................ CGGGCTGGCCGGGGCGGCGTGTTGCTCGGCAGCG 1141124 32 100.0 36 ................................ AGTGCGGTCGCGATGCTCGACGCCACGCCGTTGAGG 1141056 32 100.0 35 ................................ ACCGTCGTGTGGATGGACTTCGACGCCGCCAAGGC 1140989 32 96.9 34 .........C...................... ACCTTCCACACAGCGGCCTGCTTCCAGGCGTCGT 1140923 32 96.9 35 .........C...................... GCCACCTGCACCGGGTCCGTGCTGGACTTCACAAC 1140856 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.5 35 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : CTGGATGGCTACCCGCCATTTCTATGGAAGTGAATCCCCATGCTGATGCTCATCACCTACGATGTGAACACCCAGGATGCATCCGGGCGCCGCCGGCTGCGCCGGGTTGCCAGAGCCTGTCAGGATTTTGGGCAAAGGGTTCAGTTCTCGGTTTTCGAATGCGACGTCGACCCGGCACAATGGGCCGTTCTGCGTGCCCGTTTGATCGGAGAAATCAATCAAGAGACGGACAGTCTCCGCTTCTATCATCTCGGAGCCAACGCGGCCCGCCGCATCGAGCATGTGGGCGCCAAACCGGTGCTGGATCTCGGTGGCGCATTGATCTTTTGATCGGTGCGAACCGGAAGCGGACACGAAACCCCCGAGGGGTTCGCACGTCATTCTCATCAATGACTTGTGCGGCTCCGACACCGGAATGACTGCTTCCGCGGCCGCTTCCGAAGTAGGTTCGCATCCGTCGGGGGATTGTGGGTTCTTGAACAAGTGCATAAAGATGAGGA # Right flank : TTGTAGCGGTGGGCCTCGTCGACGAACAGGCAGTAGTCGCCCTTCGTGCGAGGGCTGCTTCCTCAAGCCGAATCGCTCCTGTTGTGAAAATCGGTTCATGACGGCTCGGGGAAATTCAGCGTTCCCAGGGCATCGGCAGGTTCAGTCTATCTGTAACTTGATACGGGTGTATTGAGTCATGGTTGGGCTAAACCTGTTGATGTTTTAAATAGGTTAAGTTGGACCGACTTTTGACGGTACTGTTTCCATAATAAATCTTAAGACAAATGGGCCGTCACTGCTCAATTATTATCACTGCTTCGGGTGAAGGCTCACGATGTGCTGCGGCGGTTTGGTTCTGCCCGGTTTAGGTGTGGGCGGGGCGCCATCCGTCTGCTAAGGAAGAGGGTGCGGCCGCCAGCCGCGGGTGACGAGAATGCGAAGGGCGGGAAGCGCGTGTTCGTTGATAGCTTTATGAATGACCGATGCCTCTCATGCGCTGATGTCCGGTCCGTCCATGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 1151413-1151914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032339.1 Azospirillum brasilense strain MTCC4038 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1151413 32 100.0 34 ................................ AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG 1151479 32 100.0 35 ................................ GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC 1151546 32 100.0 35 ................................ TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG 1151613 32 100.0 37 ................................ AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG 1151682 32 100.0 35 ................................ CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG 1151749 32 100.0 35 ................................ TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC 1151816 32 100.0 35 ................................ CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG 1151883 32 96.9 0 ....................C........... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : TCGTGCGCCAAGGTCCGCTTGCCTCGGCCGGAGCGGCAGTCGAGGCATGGCCTCCTCCCAACGGAATGGACAGCGGTTCGGGCGGTCGTTCGCTCGGCCCGTTAAGGACTTTTGTTCGGGAGAGGGGTGCGGTTGAGTGTCGGAAGAGGATAAGGATCGTCGTAATCGTCAAGGCTGAGGAACGGGTTCCGCTTTCCCCATCTGGGAGCACATGGCGCCCGCCGATGTGCAAACGGTGGGCGGAACACTGATCGGTGTCGAGGCGGCCTGCCGTATCGAGCACAGGGTGTCAAACCGGTGCTGGATTTCGGCGACGCGTTGGTTTTTAAATCGGTGCGAACCGGAAGCGGACATGAAACCCCCGAGGGGTTCGCACATCATTCTCATCAATGACTTGTACGGTTCCGACATCGAGATGGCCGCTTCTCGATTCGCTCCCGATGGAGGTTCGCGCCCGTTGGGGGATTATGGGTTGTTGAACAAGTGCATAAAGATGAGGA # Right flank : CAGATTATTACTATTTCGAATGCTTTGAATCGGGCCATCTTTATCATAGAACCCAAGTCACGCTAGTTCGGATGGACCCTGATTTCTCAGAACATCAACAAAGACTGCCCAAGCGTGACCCGACATAAGCGGCTTCGTCACTGGGAGATGGCCCTGACGGCGAAGTTTTGACGGAGCAGCACCATGGGGCCGATCCCGCAGCCCCGATCGATTGTCCTGCCCTCGCGCCGGTTCTATTCATAAACGGCGTTTCTGACATCGGTCGGAAACGCCCCAGCCATGCCTTCGAACGCGGTGTTTGTCAGGGCAACCACCGAGAGGCCGTTCTTGCGGTCGATGAACCAGGAATGGCCGTAGGCACCGCCCCATTGCAGCGTGCCAGCGGCCTGCGGTGTGCCCGTCAATGCCGGATCGTCCAGCACCGCCCAGCCATAGCCGAAGCCCCAACCCGGCCCCTGCGTTTGCGCCGTCGCGCCGACCTGATCATGGACCATCAGCCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //